Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0198 ATGAAGCTTCTTCTACCATTACTGCAGCTCTTCTATGTCTTAGCATTGATGGTCATCATCACTTCACTACCTTATGCTGCTGTAGGTAATCATCTAGAAGCAGATGCTCTCTTGAAGTGGAAAGCCAGCCTTGACAACCAAACCCAGACTTTGCTGCTCTCTTCATGGACGAGTAACAGTTCTAGTCCATGCAATTGGTTGGGAATTCAATGTGAGTCCAAATCCATCTCCAAGCTAAATCTTACAAATGCGGGGCTCAGAGGTACGCTTCAAACCCTCAACTTGTCATCACTTTCAAAACTCTGCAGCATAGATCTAAGCATCAACTTTTTGTATGGAGTTATACCTCACCAAATTGGGTTGATGTCCAACTTGGAATCTCTTGATTTGTCTGGTAACAACCTCTCTGGTATCATTCCTTCCATAATCGGAAACTTGACAAAGGTCAAATCATTATATTTATACTCAAATAAGCTCACCGGTCCAATTCCACCTTCCATAGGTAACTTGGTTAATGTGGAAAATGTTTTCCTTTATGAAAATAATCTCTCTGGGTCAATTCCTTCCACCATCGGAAATTGGACAAAGGCCAAGGTGTTATATTTATACTCAAACCAGCTCACTGGTCCAATTCCACCTTCCATAGGTAACTTGGTCAATTTGGAAGAGGTCAGGATTCATATAAATAAACTCTCTGGGCCAATTCCTTCCACCATTGAAAATTTGACAAAGGCCAGAGTATTATCTTTAATGTACAATGCATTTAGTGGTGACCTTCCAGTAGAGATGAACAGGCTTACCAATTTGGAAAAATTGCAGTTAAGTTACAATAAATTGACAGGCCATTTACCTGACAACATTTGTGCTGGTGGAAATTTAAAAAATTTCACTGCATCAAATAACCAATTCATGGGCCAAGTTCCAAGGAGTTTGAAGAATTGCTCCAGCCTTATAAGAGTCAGGCTTCAACAAAACCAACTAACTGGAAACATAACAGATGTTTTTGGTGTATATCCAAATTTGGACTACATCGAACTGAGTGAAAACAATTTTTATGGCCACCTTTCGCCAAATTGGGGAAAGTGCAACATCATCACAGCCTTGAAAGTCTCCAACAATAATTTGTCAGGTACGATACCACCAGAGCTAGGCGAGGCAACCAATTTACATGTGCTCAACTTGTCTTCAAACCACCTGACGGGAGAAATTCCAAAGGACCTAGGCAACTTGAAGTGGTTGATCAAATTCTCGATAAGTGATAATCATCTTTCAGGAAATATTCCCATTCAACTAACATCATTAAAACAACTTGATACCTTGGAGGTTGCAGCAAATAATTTGAGTGGCTTCATCCCATCACAACTTGGATGGTTCCCTAAGTTATTGTATTTGAATTTAAGTCAAAATAACTTTGAAGGAAGTATTCCTGTTGACATTGGCCTATTAAAAGCTCTTCAAAGTCTTGATCTTAGCTGGAACTTTTTGGGTGGAGCCGTACCACCAGTGCTTGCACAGTTGAAATCCTTAGAGACATTGAATCTGTCACATAATAATTTTTCTAGTGTCATTCCCTCAAGTTTTGATGAGATGTTAGGCTTGACAACTATTGATATATCATATAACCAATTAGAAGGCCTAGTTCCAAGCATTCCAACCTTCCAAAAAGCTCCGTATGATGCATTCAGAAATAACAAAGGCTTGTGTGGTAACACATCTACCTTGGAGCCTTGCTCAACATCAAGTGGCAAATCTCATAACAAAATCTTGTTGGTAGTTTTACCCATTACTTTGGGCACTGTAATACTAGCACTTTTTGTTTATGGCGTCTCATATTATCTCTACTACACTTCAAGTGCCAAAACGAACGATTCTGCAGAATTACAAGCTCAAAATCTATTTGCTATATGGAGTTTTGATGGAATAATGGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTGACAGCAAACATCTCATTGGGGAAGGAGTACATGGATGTGTTTACAAAGCAGAATTGTCCAATGGTCTAGTTGTGGCTGTGAAGAAACTTCATTCTTTACCAGATGGTGAAATGTCTAATCTAAAAGCTTTTTCAAGTGAGATCCAAGCTTTGACGGATATCCGACATCGTAACATTGTGAAGTTATATGGCTTTTGTTCACATTCACTACACTCATTTTTAGTTTATGAGTTCTTGGAGAAGGGTAGTGTTGACAAGATTCTAAGAGATGATTATCAAGCAACTGCATTTGATTGGAATATGAGGATGAATGTCATTAAGGATGTAGCTAATGCTTTACGCTATATGCATCATGATTGCTCACCTCCAATTGTTCATCGCGACATATCCAGCAAGAATATTCTTTTGGATTTAGAATATGTGGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTAATCCTAATTCAGCAAATTGGACCTCATTTGCAGGCACATTTGGATATGCTGCTCCAGAACTAGCTTACACGATGGAAGTAAATCCGAAATGTGATGTGTACAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAGCATCCCGGTGATTTTATATCCTCACTCAACGTTGCAGGCTCAACACTTGAAGTCATATCTTTTATAGATAAGTTGGACGTACGTCCCCCTCATCCTATACATTGTGTTTTTAAGGAGGTGGTATCAATGGCAAGGATAGTTATTGCTTGCTTCACTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAAGTTTGCAAGGAGCTTGCAATGTCAAACTCTTCTATAATGGGAAAGAACCGACAACTTCTTCAAACTTGGAGGCAAGGACAAATAATGTTTCCAATCCTGAAGCATTATTCCAAGATCGTGAAGCTTGCTGTTCATTCCAAAGCAACAATTTGCATGCATCGTACAGACCTGGTTGAAATCCCTACTTGGTTCACAAAGCCCACCAAAATTAGCTGTATCCAAAAATCTCATCTTCAGTCCAATATCAGTAATGAAAGGATGAACCTTGATAAAGTTAAGAACATCTTGATCATGATATCCAGGATAGGTTTCTCACTTTACAAAGTTGAACCCTCCATTCGGTCTGTTCTCTACATCATCGAAGCGACCTGTGAAATGATCACAGGCTATTTGGAAATCTGCATCAAGATGAAACCGAGGAAATGGGTCCCTGAACCACATAATGTCGGCATCCTAGAAGAGAGGAACACCAAAGATGGTAAATCTTTTATGGCCATGTACTTTGAAACCTTGATCATGCTGAACTTGTATGGACGGTTAGGCCAATTTGGAAAGATGGAAGAAGTTTTGACAGTGATGGAAAATGGATCATGTGAAGCTGATATTAGCACATACAATATCTTGATAAATAGGTATGGTCAAGCTGGATTCATTGACAAAATGGAAGGCCTATTTCAATTGTTGCATAGTAAAGGTTTGAAACCTGATGTGGTGACTTGGACTTCACGTATTGGAGCATACTCTAAAAAGAAGCTTTATGTAAGGTGCTTAGAAATATTTGAAGAAATGATTGATTCTGGTTGCTACCCTGATGGAGGAACAGCTAAGGTGCTCCTTGCAGCATGCTCCAATGAAGATCAGACTGAGCAGGTTACTACTGTGATTAGAACAATGGACAAGGATATCAAAACTGTTCTGACACCAGTATAA 3681 0.3907 MKLLLPLLQLFYVLALMVIITSLPYAAVGNHLEADALLKWKASLDNQTQTLLLSSWTSNSSSPCNWLGIQCESKSISKLNLTNAGLRGTLQTLNLSSLSKLCSIDLSINFLYGVIPHQIGLMSNLESLDLSGNNLSGIIPSIIGNLTKVKSLYLYSNKLTGPIPPSIGNLVNVENVFLYENNLSGSIPSTIGNWTKAKVLYLYSNQLTGPIPPSIGNLVNLEEVRIHINKLSGPIPSTIENLTKARVLSLMYNAFSGDLPVEMNRLTNLEKLQLSYNKLTGHLPDNICAGGNLKNFTASNNQFMGQVPRSLKNCSSLIRVRLQQNQLTGNITDVFGVYPNLDYIELSENNFYGHLSPNWGKCNIITALKVSNNNLSGTIPPELGEATNLHVLNLSSNHLTGEIPKDLGNLKWLIKFSISDNHLSGNIPIQLTSLKQLDTLEVAANNLSGFIPSQLGWFPKLLYLNLSQNNFEGSIPVDIGLLKALQSLDLSWNFLGGAVPPVLAQLKSLETLNLSHNNFSSVIPSSFDEMLGLTTIDISYNQLEGLVPSIPTFQKAPYDAFRNNKGLCGNTSTLEPCSTSSGKSHNKILLVVLPITLGTVILALFVYGVSYYLYYTSSAKTNDSAELQAQNLFAIWSFDGIMVYENIIEATEDFDSKHLIGEGVHGCVYKAELSNGLVVAVKKLHSLPDGEMSNLKAFSSEIQALTDIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSVDKILRDDYQATAFDWNMRMNVIKDVANALRYMHHDCSPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNPNSANWTSFAGTFGYAAPELAYTMEVNPKCDVYSFGVLALEILFGKHPGDFISSLNVAGSTLEVISFIDKLDVRPPHPIHCVFKEVVSMARIVIACFTESPRSRPTMEQVCKELAMSNSSIMGKNRQLLQTWRQGQIMFPILKHYSKIVKLAVHSKATICMHRTDLVEIPTWFTKPTKISCIQKSHLQSNISNERMNLDKVKNILIMISRIGFSLYKVEPSIRSVLYIIEATCEMITGYLEICIKMKPRKWVPEPHNVGILEERNTKDGKSFMAMYFETLIMLNLYGRLGQFGKMEEVLTVMENGSCEADISTYNILINRYGQAGFIDKMEGLFQLLHSKGLKPDVVTWTSRIGAYSKKKLYVRCLEIFEEMIDSGCYPDGGTAKVLLAACSNEDQTEQVTTVIRTMDKDIKTVLTPV* 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0198 1226 Pfam PPR repeat 1120 1150 IPR002885 -
Lja5g0198 1226 SUPERFAMILY L domain-like 293 569 - -
Lja5g0198 1226 SUPERFAMILY L domain-like 34 330 - -
Lja5g0198 1226 ProSiteProfiles Leucine-rich repeat profile. 388 411 IPR001611 GO:0005515
Lja5g0198 1226 PRINTS Leucine-rich repeat signature 266 279 - -
Lja5g0198 1226 PRINTS Leucine-rich repeat signature 125 138 - -
Lja5g0198 1226 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 12 157 - -
Lja5g0198 1226 ProSiteProfiles Protein kinase domain profile. 654 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0198 1226 Gene3D Transferase(Phosphotransferase) domain 1 733 940 - -
Lja5g0198 1226 ProSiteProfiles Leucine-rich repeat profile. 508 529 IPR001611 GO:0005515
Lja5g0198 1226 ProSitePatterns Tyrosine protein kinases specific active-site signature. 778 790 IPR008266 GO:0004672|GO:0006468
Lja5g0198 1226 ProSitePatterns Protein kinases ATP-binding region signature. 660 683 IPR017441 GO:0005524
Lja5g0198 1226 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1153 1187 IPR002885 -
Lja5g0198 1226 SMART LRR_typ_2 506 529 IPR003591 -
Lja5g0198 1226 SMART LRR_typ_2 122 145 IPR003591 -
Lja5g0198 1226 SMART LRR_typ_2 266 290 IPR003591 -
Lja5g0198 1226 SMART LRR_typ_2 146 170 IPR003591 -
Lja5g0198 1226 SMART LRR_typ_2 530 553 IPR003591 -
Lja5g0198 1226 SMART LRR_typ_2 387 410 IPR003591 -
Lja5g0198 1226 SMART LRR_typ_2 458 482 IPR003591 -
Lja5g0198 1226 SUPERFAMILY Protein kinase-like (PK-like) 637 922 IPR011009 -
Lja5g0198 1226 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 133 928 - -
Lja5g0198 1226 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 133 928 - -
Lja5g0198 1226 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 12 157 - -
Lja5g0198 1226 Pfam PPR repeat family 1152 1200 IPR002885 -
Lja5g0198 1226 Gene3D Tetratricopeptide repeat domain 1072 1221 IPR011990 GO:0005515
Lja5g0198 1226 Pfam Leucine rich repeat 100 159 IPR001611 GO:0005515
Lja5g0198 1226 Pfam Leucine rich repeat 508 545 IPR001611 GO:0005515
Lja5g0198 1226 Pfam Leucine rich repeat 436 493 IPR001611 GO:0005515
Lja5g0198 1226 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1118 1152 IPR002885 -
Lja5g0198 1226 Gene3D Phosphorylase Kinase; domain 1 616 732 - -
Lja5g0198 1226 Gene3D Ribonuclease Inhibitor 238 581 IPR032675 -
Lja5g0198 1226 Pfam Protein kinase domain 656 920 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0198 1226 TIGRFAM PPR: pentatricopeptide repeat domain 1155 1188 IPR002885 -
Lja5g0198 1226 TIGRFAM PPR: pentatricopeptide repeat domain 1121 1154 IPR002885 -
Lja5g0198 1226 Pfam Leucine Rich Repeat 388 410 IPR001611 GO:0005515
Lja5g0198 1226 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Lja5g0198 1226 ProSiteProfiles Leucine-rich repeat profile. 124 146 IPR001611 GO:0005515
Lja5g0198 1226 SMART LRR_sd22_2 218 244 - -
Lja5g0198 1226 SMART LRR_sd22_2 266 289 - -
Lja5g0198 1226 SMART LRR_sd22_2 530 548 - -
Lja5g0198 1226 SMART LRR_sd22_2 482 511 - -
Lja5g0198 1226 SMART LRR_sd22_2 146 172 - -
Lja5g0198 1226 SMART LRR_sd22_2 122 140 - -
Lja5g0198 1226 Gene3D Ribonuclease Inhibitor 30 226 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0198 Lja-Chr5 1753012 1758822 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0198 13 826 Receptor kinase-like Gene Family AT4G08850 43.601 0.0 709
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g0198 Pkinase 1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0198 - - mtr:MTR_0365s0020 1063.14