Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0197 ATGAAGCTTCTTCTACCATTAATGCTCTTCTATGCCTTTGCATTAATGGTCATCACTGCAGGTAATCAGGAGGCAGGTGCTCTCTTAAGGTGGAAAGCCAGCCTTGACAACCAAAGCCAGCTCTTTTCATGGACAAGTAACAGTACTAGTCCATGTAATTGGCTGGGAATTCAATGTGAGTCGTCCAAATCTATCTCCATGCTGAATCTTACAAGTGTTGGACTCAAAGGTACACTTCAAAGCCTCAACTTGTCATCATTTCCAAAACTCTACAGCATAGATCTAAGCATCAACTCCTTGTATGGAGTTATTCCTCGCCAACTTGGGTTGATGTCCAACCTGGAAACTCTTGATTTGTCAGCTAACTACCTCTCTGGTATCATTCCTTCCAGCATTGGCAACCTTTCCAAACTCTCGTATCTTTATCTCGGTCAAAATGATCTCTCTGGACCAATTCCTTCCAGCATTGGAAATTTGACAGAGTTCAAGGAATTAGATTTATTCTCAAATAAGCTCACCGGTGCTATTCCGTCTTCCATAGGTAACTTGGTCAATTTGGATTCTATTGCCCTTAGTGAAAATCAACTCTCTGGGTCAATTCCTCCCACCATCGGAAACTTGACAAAGGTTAAGTTATTATACTTATACACAAATCAGCTCAGTGGCAACTTGAAGTTGTTGATCAAACTCTCGATAAGTGATAATCATCTTTCAGGAAATATTCCCATTCAACTGACATCGTTGCAGGAACTAGATACCTTGGATGTTGCAGCAAATAATTTAGGTGACTTCATGCCAGCACAACTTGGAAGGCTGCCAAAGCTATCGTATTTGAATTTGAGTCAAAATAAGTTTGAGGGAAGTATACCTGTTGAGTTTGGCCAAATAAAGGTTCTTCAAAGTCTTGATCTTAGTGGGAATTTTGTGGGCGGTGTCATACCACCTGTGCTTTCACAACTGAAATTGTTAGAAACATTGAATCTCTCTCATAATAATCTTTCGGGAGTAATTCCCTCAAGCTTTGGCGAGATGTTTAGTTTGACAACTATTGATATATCATATAACCAATTAGAAGGCCTAGTTCCAAGCATTCCAACCTTCCAAAAAGCTCCGTATGATGCATTCAGAAATAACAAAGGCTTGTGTGGTAACACATCTACCTTGGAGCCTTGCTCAACATCAAGTGGCAAATCTCATAACAAAATCTTGTTGGTAGTTTTACCCATTACTTTGGGCACTGTAATACTAGCACTTTTTGTTTATGGCGTCTCATATTATCTCTACTACACTTCAAGTGCCAAAACGAACGATTCTGCAGAATTACAAGCTCAAAATCTATTTGCTATATGGAGTTTTGATGGAATAATGGTGTATGAGAACATTATTGAAGCCACAGAAGATTTTGACAGCAAACATCTCATTGGGGAAGGAGTACATGGATGTGTTTACAAAGCAGAATTGTCCAATGGTCTAGTTGTGGCTGTGAAGAAACTTCATTCTTTACCATATGGTGAAATGTCTAATCTAAAAGCTTTTTCAAGTGAGATCCAAGCTTTGACGGATATCCGACATCGTAACATTGTGAAGTTATATGGCTTTTGTTCACATTCACTACACTCATTTTTAGTTTATGAGTTCTTGGAGAAGGGTAGTGTTGACAAGATTCTAAGAGATGATTATCAAGCAACTGCATTTGATTGGAATATGAGGATGAATGTCATTAAGGATGTAGCTAATGCTTTACGCTATATGCATCATGATTGCTCACCTCCAATTGTTCATCGCGACATATCCAGCAAGAATATTCTTTTGGATTTAGAATATGTGGCTCATGTCTCAGACTTCGGAACAGCTAAGCTTCTTAATCCTAATTCAGCAAATTGGACCTCATTTGCAGGCACATTTGGATATGCTGCTCCAGGTCAATTCCTTTTCTTTATTCTAATGAAAGATATCATGATTTTGTAA 1968 0.3872 MKLLLPLMLFYAFALMVITAGNQEAGALLRWKASLDNQSQLFSWTSNSTSPCNWLGIQCESSKSISMLNLTSVGLKGTLQSLNLSSFPKLYSIDLSINSLYGVIPRQLGLMSNLETLDLSANYLSGIIPSSIGNLSKLSYLYLGQNDLSGPIPSSIGNLTEFKELDLFSNKLTGAIPSSIGNLVNLDSIALSENQLSGSIPPTIGNLTKVKLLYLYTNQLSGNLKLLIKLSISDNHLSGNIPIQLTSLQELDTLDVAANNLGDFMPAQLGRLPKLSYLNLSQNKFEGSIPVEFGQIKVLQSLDLSGNFVGGVIPPVLSQLKLLETLNLSHNNLSGVIPSSFGEMFSLTTIDISYNQLEGLVPSIPTFQKAPYDAFRNNKGLCGNTSTLEPCSTSSGKSHNKILLVVLPITLGTVILALFVYGVSYYLYYTSSAKTNDSAELQAQNLFAIWSFDGIMVYENIIEATEDFDSKHLIGEGVHGCVYKAELSNGLVVAVKKLHSLPYGEMSNLKAFSSEIQALTDIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSVDKILRDDYQATAFDWNMRMNVIKDVANALRYMHHDCSPPIVHRDISSKNILLDLEYVAHVSDFGTAKLLNPNSANWTSFAGTFGYAAPGQFLFFILMKDIMIL* 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0197 655 ProSitePatterns Protein kinases ATP-binding region signature. 474 497 IPR017441 GO:0005524
Lja5g0197 655 Gene3D Phosphorylase Kinase; domain 1 430 546 - -
Lja5g0197 655 Gene3D Ribonuclease Inhibitor 20 170 IPR032675 -
Lja5g0197 655 ProSiteProfiles Protein kinase domain profile. 468 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0197 655 Pfam Leucine rich repeat 88 148 IPR001611 GO:0005515
Lja5g0197 655 Pfam Leucine rich repeat 299 357 IPR001611 GO:0005515
Lja5g0197 655 Gene3D Ribonuclease Inhibitor 171 263 IPR032675 -
Lja5g0197 655 SUPERFAMILY L domain-like 39 395 - -
Lja5g0197 655 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 222 640 - -
Lja5g0197 655 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 129 - -
Lja5g0197 655 PRINTS Leucine-rich repeat signature 114 127 - -
Lja5g0197 655 PRINTS Leucine-rich repeat signature 320 333 - -
Lja5g0197 655 Gene3D Ribonuclease Inhibitor 264 392 IPR032675 -
Lja5g0197 655 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 119 224 - -
Lja5g0197 655 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 222 640 - -
Lja5g0197 655 SMART LRR_typ_2 135 159 IPR003591 -
Lja5g0197 655 SMART LRR_typ_2 344 367 IPR003591 -
Lja5g0197 655 SMART LRR_typ_2 111 134 IPR003591 -
Lja5g0197 655 SMART LRR_typ_2 272 295 IPR003591 -
Lja5g0197 655 SMART LRR_typ_2 183 207 IPR003591 -
Lja5g0197 655 SMART LRR_typ_2 320 343 IPR003591 -
Lja5g0197 655 SUPERFAMILY Protein kinase-like (PK-like) 450 645 IPR011009 -
Lja5g0197 655 Pfam Protein kinase domain 470 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0197 655 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Lja5g0197 655 ProSitePatterns Tyrosine protein kinases specific active-site signature. 592 604 IPR008266 GO:0004672|GO:0006468
Lja5g0197 655 Gene3D Transferase(Phosphotransferase) domain 1 547 646 - -
Lja5g0197 655 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 129 - -
Lja5g0197 655 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 119 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0197 Lja-Chr5 1745238 1748608 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0197 63 641 Receptor kinase-like Gene Family AT4G08850 40.217 3.32e-141 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g0197 Pkinase 7.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0197 - - mtr:MTR_1g040615 657.136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0197 5 1745238 1748608 Lja5g0197 5 1745238 1748608 ECH