Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0196 ATGGAAGTAAATCCGAAATGTGATGTGTACAGTTTTGGAGTATTAGCATTGGAAATACTTTTTGGAAAGCATCCCGGTGATTTTATATCCTCACTCAACGTTGCAGGCTCAACACTTGAAGTCATATCTTTTATAGATAAGTTGGACGTACGTCCCCCTCATCCTATACATTGTGTTTTTAAGGAGGTGGTATCAATGGCAAGGATAGTTATTGCTTGCTTCACTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAAGTTTGCAAGGAGCTTGCAATGTCAAACTCTTCTATAATGGGTTAG 303 0.4092 MEVNPKCDVYSFGVLALEILFGKHPGDFISSLNVAGSTLEVISFIDKLDVRPPHPIHCVFKEVVSMARIVIACFTESPRSRPTMEQVCKELAMSNSSIMG* 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0196 100 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 97 - -
Lja5g0196 100 ProSiteProfiles Protein kinase domain profile. 1 93 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0196 100 Gene3D Transferase(Phosphotransferase) domain 1 1 98 - -
Lja5g0196 100 Pfam Protein tyrosine and serine/threonine kinase 3 91 IPR001245 GO:0004672|GO:0006468
Lja5g0196 100 SUPERFAMILY Protein kinase-like (PK-like) 3 91 IPR011009 -
Lja5g0196 100 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 97 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0196 Lja-Chr5 1744818 1745120 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0196 3 97 Receptor kinase-like Gene Family AT1G72460 34.821 6.94e-11 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Lja5g0196 PK_Tyr_Ser-Thr 1.2e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0196 - - gmx:100787487 130.954