Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0189 ATGAGTAGTTGTGGAAGAGAAGGTGCTGTGAGGCAGTATATAAGGTCAAAGGTTCCTCGTCTAAGATGGACTCCTGAACTTCACCGTTGCTTTGTTCATGCCATTGAAAGCCTTGGTGAGGCTACTCCTAAGCTTGTTCTTCAGATGATGGATGTTAAAGGGCTAACAATTTCACATGTCAAGAGTCATCTTCAGATGTACAGGAGCATGAGAGGTGAATTGGGCAGACAAGGTAGGACAATATCCTCCCAACAGCATGGAAACCAATCTTTTGAAGAACATGATGATGGGTGTGTTGATCAAGCAAACAATGATGTTGGTGTTCAGCTTCAGCACTCTTGTTCAAACCCCAATATCAGGAGAGAATCTGATTCCTCATTTGGCTACAGTAATCTCACATCTAAAAGAGCTAGAACCAGTTCCATCTCAGAGAGCCAAAGAATATGTGATGCAGTTCCTAATCCGTACTGCTTTTATGACTATCTGGGTGAACAGAAGAATGGAATAAAGGAATTTTGTGGTGGTTCAAGATGGCAGCAGATTAAGACACAACAACCTCATTCCACACCATTCCCTCTGCTACCAGATTTTCCTAATCTCACTTCATTCAAATGTCCAAACCAAGAATCTGATTTTCTTCAGGTTACTAAATTAAATGATAGAAAGATCACTTCGCAGCCAATTAATGTACTTGAGAACAGGGAGAAGGCACATGCAGAAGTTGAAGGTGTAGGAGGAGGAGGATATAATGAGTTGTCATTATCACTTACATTACCAAATCCTTCACCTCAGAGAAGTAATGGTTCTTGGGGCAGTGAGATCAGTGAGGCAATCTCATCATACCCTGGGTTTAGCAACTACAAGGACTGCTCTAGTTCATCCACTGTCAAAGAAAGAGTCAATTTGGACCTGTCTTTGGCCATATGTGGCAATTGA 936 0.4177 MSSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIESLGEATPKLVLQMMDVKGLTISHVKSHLQMYRSMRGELGRQGRTISSQQHGNQSFEEHDDGCVDQANNDVGVQLQHSCSNPNIRRESDSSFGYSNLTSKRARTSSISESQRICDAVPNPYCFYDYLGEQKNGIKEFCGGSRWQQIKTQQPHSTPFPLLPDFPNLTSFKCPNQESDFLQVTKLNDRKITSQPINVLENREKAHAEVEGVGGGGYNELSLSLTLPNPSPQRSNGSWGSEISEAISSYPGFSNYKDCSSSSTVKERVNLDLSLAICGN* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0189 311 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 311 - -
Lja5g0189 311 SUPERFAMILY Homeodomain-like 17 69 IPR009057 -
Lja5g0189 311 Pfam Myb-like DNA-binding domain 21 68 IPR001005 -
Lja5g0189 311 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 311 IPR044848 GO:0003700
Lja5g0189 311 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 72 IPR017930 -
Lja5g0189 311 Gene3D - 18 71 - -
Lja5g0189 311 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 69 IPR006447 GO:0003677
Lja5g0189 311 MobiDBLite consensus disorder prediction 78 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0189 Lja-Chr5 1681660 1685792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0189 1 74 G2-like Transcription Factor Family AT1G14600 68.293 6.70e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja5g0189 Myb_DNA-binding 9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0189 - - gmx:100787188 372.859