Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0187 ATGGCTGGAAATACTGTCCTGCCTATCAGTTTCTTCAAGATCATTCTCAAAACTAATCTTCAAAGCCTTAAATTACCTAAAAAGTTCACAGAGAAATATGGTGGTGCTTTGTCTAATCCAGTGCTTTTGAAGCCTCCAGATGGAACTGATTGGAAAGTTTATTGGACAAAACAGAATGGTGAGGTTTGGTTTCAAAAGGGTTGGAATGAATTTGCTCAAAATTACTCTCTAGATCATGGGCATCTGGTGGTGTTTAAATATGGAGGGACTCCACATTTTGATGTGCTCATACTTGATCAAAGTGCCTTAGAAATACACTATCCTTCTTGTGACTTTGACCAGACTGCTCAAAGAAGTTCATTATCTTTGAATTGGCCAAGGGGAGCTAGAGCGCAGGAAGTAGCTGCTGCATTCATCTCAAATAATCCTTTTTTCACTGTTACCATAAATCCTATTAATCTTGCTGGAAGTCGGCTGAATATTGAGAAGGTTGTGAAGCTGCAGATTGGGGAAAGATCATGGAATGTGAAGTTGCTCCGTCTTCGCCTAACTTCAGGTCGCCGCTTCTGTGCTGGTTGGTCCTTGTTTGCAAAGGAAAGTGGATTGCAAACCGGAGACGTTTGTGTCTTTGAATTCATCAACAGAGAAGAACCAGTTTTTGAAGTTCATATTTCCAAAAGCCACAGTTGA 690 0.4058 MAGNTVLPISFFKIILKTNLQSLKLPKKFTEKYGGALSNPVLLKPPDGTDWKVYWTKQNGEVWFQKGWNEFAQNYSLDHGHLVVFKYGGTPHFDVLILDQSALEIHYPSCDFDQTAQRSSLSLNWPRGARAQEVAAAFISNNPFFTVTINPINLAGSRLNIEKVVKLQIGERSWNVKLLRLRLTSGRRFCAGWSLFAKESGLQTGDVCVFEFINREEPVFEVHISKSHS* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0187 229 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 111 - -
Lja5g0187 229 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 128 226 - -
Lja5g0187 229 Gene3D - 8 102 IPR015300 -
Lja5g0187 229 PANTHER B3 DOMAIN-CONTAINING 6 111 - -
Lja5g0187 229 CDD B3_DNA 10 99 IPR003340 GO:0003677
Lja5g0187 229 Pfam B3 DNA binding domain 19 94 IPR003340 GO:0003677
Lja5g0187 229 Pfam B3 DNA binding domain 167 224 IPR003340 GO:0003677
Lja5g0187 229 PANTHER B3 DOMAIN-CONTAINING 128 226 - -
Lja5g0187 229 Gene3D - 127 228 IPR015300 -
Lja5g0187 229 SUPERFAMILY DNA-binding pseudobarrel domain 140 226 IPR015300 -
Lja5g0187 229 SMART B3_2 144 228 IPR003340 GO:0003677
Lja5g0187 229 SMART B3_2 11 101 IPR003340 GO:0003677
Lja5g0187 229 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
Lja5g0187 229 ProSiteProfiles B3 DNA-binding domain profile. 172 228 IPR003340 GO:0003677
Lja5g0187 229 ProSiteProfiles B3 DNA-binding domain profile. 8 101 IPR003340 GO:0003677
Lja5g0187 229 CDD B3_DNA 159 226 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0187 Lja-Chr5 1655626 1656984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0187 11 117 B3 DNA Binding Superfamily AT1G49475 39.450 1.66e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja5g0187 B3 3.6e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0187 - - ccaj:109795878 271.166