Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0186 ATGGCTAAGGCTTCTAATCATGTTCAGCCAAGTCCAGTTCTGCCAATCCATTTCTTCAAGATCATTCTTAAGACTAGTCTTGAAAGGCTTGTAAGTAGAATACCCAAAAGCTTTACAGAGATGTACGAAGGTGATTTATCCAATCCAGTGTTTTTAAAGGTTCCGGATAGTACTAAATGGGAAATTCATTGGACAAAACAGAATGGTGAGGTTTGGTTTGAAAAGGGTTGGAAACAATTTGCTCAAAATTACTCTCTAGATCATGGGTACATGGTGGTGTTTAAATATGAAGGGACTTCACATTTTGATGTGCTCATTCTTGATCAAAGTGCCTTAGCAATACACTATCCTTCTTGTGACAAAAACCTTGATCAGGGGAACAATGAATCAGTTCAATTCTTGGGGGAAACCACTGCACACCAAAATGCTATACCGGAACCTGCAATGTTTTCTTCTCGATCTTATAAGAGAATGAGAAATGATACACCTGTGAATGTGGACAGAAATTCCAATATGAGAAAGTTGCAGGCTGAAGCAGGTGATGAATCTGGTCAAGGGACAAAGTTTAACAAAACTATTAAGCATAAGCTGGAAGGTTTAGAAGGTTATGTTGAGAACGTTGACAAGTATGTGAAGCTGCAGATTGGGGAAGAAAGATCATGGAATGTGAAGCTCTATCGTCATTCCTCTAATGGTCACTATTTCTCTTCTGGTTGGTCCTTGTTTCAGGAGCTGAAAGAGGAAAACAAACAAGTCCTGGAAATAACTTTGCTGAAAGGGGCAAGTATACCCATGGGATTCATCAACAAATATGTCACTGCTAGGGTAACATATGCGATACTGCAAGCTAAGAATAAAGAATGGCACGTGCAGCTATGCTATGATCGAGAGGATGGTTCTGCAAGATTCCTTTCTTCTGGTTGGTCTAAATTTGTGAGGGATTGTGAGTTGGAGGAAGGAGATACATGTGTCTTTGAGCTGGTTGATAAAGAAAAATTTGTGCTCAAAGTTAGTGCTACAAGACTTATTCTAGTTCACTCCATGGCGAAGCCAGTGTCCATTGAGGTGTGGAACCCAAGTGGCAAATACAGAGTTGTCAGCACTAAACCAATGCCTGGTACTCGTTGGATCAACCTTCTCATCCAGCAAGATTGTCGCCTTGAAATATGTACTGAGAAGAAAACAATACTGTCAGTTGAAGATATCATTGCTTTGATTGGTGAAAAGTGTGATGGAGTTATAGGACAGCTGACTGAAGACTGGGGAGAAGAGTTGTTCTCTGCCTTGAGCAGGGCAGGAGGGAAAGCTTTCAGTAATATGGCTGTTGGTTACAATAATGTGGATGTCAATGCTGCAAATAAGTATGGTGTTGCTGTTGGAAATACCCCTGGAGTTCTCACAGAGACAACAGCAGAACTGGCAGCTTCACTGACTTTGGCAGCTGCGAGAAGGATAGTTGAGGCAGATGAGTTCATGAGGGCAGGATTATATGATGGATGGCTACCTCATCTATTTGTTGGAAACTTGCTCAAGGGACAAACAGTTGGTGTTATTGGAGCTGGCCGCATTGGATCAGCTTATGCAAGAATGATGGTTGAAGGGTTCAAGATGAATCTAATTTACTACGACCTCTACCAGTCTACACGACTAGAAAAGTTTGTGACAGCTTATGCTGCATTCTTGAAAGCAAACGGTGAAACACCGGTGACTTGGAAAAGGGCATCAAGCATGGATGAGGTCCTCCAGGAGGCTGATATAATTAGTCTTCATCCTATCTTGGATAAAACCACCTATCATCTAGTCAACAAGGAAAGGCTAGCTAAGATGAAGAAGGAAGCAATTCTTGTGAACTGCAGTAGAGGGCCTGTTATTGACGAAGCTGCACTTGTAGAGCATTTAAGGCAGAACCCAATGTTTCGAGTAGGACTTGATGTGTTTGAGGAAGAGCCCTACATGAAACCTGGGCTTGCAGAGTTGAAGAATGCTATTGTGGTACCTCACATTGCATCTGCTTCCAAGTGGACCCGTGAAGGAATGGCTACACTAGCTGCTCTAAATGTGCTGGGAAAGATTAAGGGCTACCCAGTTTGGTTTGATGCTAATAAGGTGGAACCCTTCCTTGATGAGAATGCTCAACCTCCGGCTGCAAGCCCAAGCATTGTTAACGCAAAAGCTCTGGTTTGGGTGATTCCTACATCTAGGATTATAAGTGTTAGGGAAAGGATGAAGGATCTCCCTAAGTCTTGTTTTGAGTTCCCACAAAGTTTATCTCATTAA 2277 0.4216 MAKASNHVQPSPVLPIHFFKIILKTSLERLVSRIPKSFTEMYEGDLSNPVFLKVPDSTKWEIHWTKQNGEVWFEKGWKQFAQNYSLDHGYMVVFKYEGTSHFDVLILDQSALAIHYPSCDKNLDQGNNESVQFLGETTAHQNAIPEPAMFSSRSYKRMRNDTPVNVDRNSNMRKLQAEAGDESGQGTKFNKTIKHKLEGLEGYVENVDKYVKLQIGEERSWNVKLYRHSSNGHYFSSGWSLFQELKEENKQVLEITLLKGASIPMGFINKYVTARVTYAILQAKNKEWHVQLCYDREDGSARFLSSGWSKFVRDCELEEGDTCVFELVDKEKFVLKVSATRLILVHSMAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIGEKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLTETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADIISLHPILDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEAALVEHLRQNPMFRVGLDVFEEEPYMKPGLAELKNAIVVPHIASASKWTREGMATLAALNVLGKIKGYPVWFDANKVEPFLDENAQPPAASPSIVNAKALVWVIPTSRIISVRERMKDLPKSCFEFPQSLSH* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0186 758 SUPERFAMILY DNA-binding pseudobarrel domain 16 109 IPR015300 -
Lja5g0186 758 PANTHER 2-HYDROXYACID DEHYDROGENASE-RELATED 375 698 - -
Lja5g0186 758 SUPERFAMILY DNA-binding pseudobarrel domain 262 337 IPR015300 -
Lja5g0186 758 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 476 669 IPR006140 GO:0051287
Lja5g0186 758 CDD B3_DNA 17 108 IPR003340 GO:0003677
Lja5g0186 758 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 377 503 - -
Lja5g0186 758 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Lja5g0186 758 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 515 543 IPR029752 -
Lja5g0186 758 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 467 670 IPR036291 -
Lja5g0186 758 SMART B3_2 18 110 IPR003340 GO:0003677
Lja5g0186 758 SMART B3_2 253 341 IPR003340 GO:0003677
Lja5g0186 758 Pfam B3 DNA binding domain 260 339 IPR003340 GO:0003677
Lja5g0186 758 Pfam B3 DNA binding domain 19 106 IPR003340 GO:0003677
Lja5g0186 758 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 382 693 IPR006139 GO:0016616|GO:0051287
Lja5g0186 758 Gene3D - 465 668 - -
Lja5g0186 758 CDD GDH 363 693 - -
Lja5g0186 758 Gene3D - 15 111 IPR015300 -
Lja5g0186 758 ProSiteProfiles B3 DNA-binding domain profile. 263 341 IPR003340 GO:0003677
Lja5g0186 758 Gene3D - 365 693 - -
Lja5g0186 758 PANTHER ZGC:136493 375 698 - -
Lja5g0186 758 CDD B3_DNA 262 341 IPR003340 GO:0003677
Lja5g0186 758 Gene3D - 244 343 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0186 Lja-Chr5 1618104 1654226 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0186 14 342 B3 DNA Binding Superfamily AT3G18990 26.420 1.18e-30 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja5g0186 2-Hacid_dh 1.4e-16 CL0325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0186 K15893 - gmx:547640 718.383