Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0181 ATGGATCACAGTTTTTGTTTCTTCTGCTTCTGGTCTGTTTGTTCTTCAATTTTGTTCTTGCTTTTCTTGCTTTTAGTCAAAGGAAGTAGCCTTAGCCATCTTGCTCTTGGGAGATCAAAGAGGAAGTTCTACTATCATCTATCAGGTGACATGAACAACATCATCACCATGCAAAGCTTAACTGAAAGACTAAGACCCCTTGTGGGTTTGAATGGCTGGGACTACTGTGTCTGCTGGAAATTGAGTGAAGACCAAAGGTTTCTTGAGTGGTTTGGATGCTGTTGTGCTGGCACTGATAACAATCAAAATGCTGGGGAAGAACACATTTTTCCTGTCTCTTCAGCTGCTTCATGCAGGGATACCATGATTCCACACCCTAGAACAAAAACCTGTGATCTTCTTTCCCAACTTACCACTTCCATACCCACAGATTCAGGGATTCATGCACAGACCCTATTAACAAACCAACCCAATTGGTTGAACTATTCCAATAGTTTGGATCCAAACACTTTGGAAGAAACAATTAATGGGACCCAGGTTTTGATTCCTGTACCAGGTGGACTAGTAGAGCTGTTTGTAACAAAACAAGTCCCTGAAGATCATCATGTGATAGATTTTGTCACAGCACAGTGCATTGTGTTGATGGATCAGGAAGCAGTGAACCTCTCAGCCAGCATCAACATTGATGTAAATTCAATGAGCAACATGCAATCAAATCCACTTCTAGGGGATGAAAATGAAGGGAACAACAATAACAACAGGAACCATATTCATTTCCAGCCATCAGAAACTTCAAGTCTCCCACATGACATCTCTATGAACCGCATTGGCCTCTGCAATTCCCCACTGAACTTCATGCAGCATTTCAATTACGACCAGAACAACAGAATGAAAAACAATACCTTTTCTGAAGAATACCAAGGTTCATTCCTTTATGACAAGCAAGGTAACTTACTGAATTCCAAAGCAGAGGAGGAACATGACACATATCAGAAATGCTTGATGAGTACTGATACTCAATATGTGGATCCCTTGGACAACAAGGAGAAGCAAGAACACAAGGACTTGATGAAACATGTTGTTGGCCGTTCAGATTCAATGTCAGATTGCAGTGACCAGAATGAAGAAGAGGATGATGGGAAATACAGGAGAAGAAATGGGAAAGGAAACCAGTCCAAAAACCTTGTAGCTGAGAGGAAGAGAAGGAAGAAGCTGAATGACAGACTGTATAACCTTCGTTCTCTGGTTCCAAGAATTTCCAAGCTGGATAGAGCATCCATTCTTGGGGATGCCATTGAGTTTGTGAAGGATTTGCAGAAGCAAGTGAAAGAGCTCCAGGATGAGCTTGAGGAAAATTCAGACACAGGAGCTGAAAGCAACTGCATCAATGGAAATAATGGCCAACCAGATATTCCAAAAGCAGAACATGGTAAGAATCAAAATGGATTTCATGTGGGGGCACCAGGGAATGGCTATGTGTCAAAACAAAAGCAGGAAGATGCTTCTGCCACTGACAAGCAAACACAGCAAATGGAGCCTCAAGTGGAAGTGGCTCTCATAGATGGGAATGAGTACTTTGTGAAGGTGTTCTGTGAGCACAGGCCTGGAGGGTTTGGGAAATTGATGGAGGCTTTGAACACCCTTGGCATGGATGTAGTACATGCCACAGTGACCAGCCACAAGGGGCTGGTGTCAAATGTTTTTAAAGTGGAGAAAAAGGACAGTGAAATGGTTGAGGCTGAGGATGTAAGAGACTCACTACTAGAGCTTACAAGGAACAGAACAAGAGGGTGGAGTCATGAGATGACAGCAACATCAGAAAATGGTGTGGGCAGCAGGGAACAGCATCACCTCAACAACCACCAGATGGGTGCTTATCATCCGCACCAATTTCATAGTTAA 1902 0.429 MDHSFCFFCFWSVCSSILFLLFLLLVKGSSLSHLALGRSKRKFYYHLSGDMNNIITMQSLTERLRPLVGLNGWDYCVCWKLSEDQRFLEWFGCCCAGTDNNQNAGEEHIFPVSSAASCRDTMIPHPRTKTCDLLSQLTTSIPTDSGIHAQTLLTNQPNWLNYSNSLDPNTLEETINGTQVLIPVPGGLVELFVTKQVPEDHHVIDFVTAQCIVLMDQEAVNLSASINIDVNSMSNMQSNPLLGDENEGNNNNNRNHIHFQPSETSSLPHDISMNRIGLCNSPLNFMQHFNYDQNNRMKNNTFSEEYQGSFLYDKQGNLLNSKAEEEHDTYQKCLMSTDTQYVDPLDNKEKQEHKDLMKHVVGRSDSMSDCSDQNEEEDDGKYRRRNGKGNQSKNLVAERKRRKKLNDRLYNLRSLVPRISKLDRASILGDAIEFVKDLQKQVKELQDELEENSDTGAESNCINGNNGQPDIPKAEHGKNQNGFHVGAPGNGYVSKQKQEDASATDKQTQQMEPQVEVALIDGNEYFVKVFCEHRPGGFGKLMEALNTLGMDVVHATVTSHKGLVSNVFKVEKKDSEMVEAEDVRDSLLELTRNRTRGWSHEMTATSENGVGSREQHHLNNHQMGAYHPHQFHS* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0181 633 Gene3D - 378 454 IPR036638 GO:0046983
Lja5g0181 633 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 389 438 IPR011598 GO:0046983
Lja5g0181 633 MobiDBLite consensus disorder prediction 495 510 - -
Lja5g0181 633 Pfam Helix-loop-helix DNA-binding domain 396 439 IPR011598 GO:0046983
Lja5g0181 633 CDD ACT_UUR-ACR-like 527 590 - -
Lja5g0181 633 CDD bHLH_AtAMS_like 392 462 - -
Lja5g0181 633 MobiDBLite consensus disorder prediction 449 510 - -
Lja5g0181 633 SMART finulus 395 444 IPR011598 GO:0046983
Lja5g0181 633 PANTHER TRANSCRIPTION FACTOR ABORTED MICROSPORES 145 600 - -
Lja5g0181 633 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 60 208 IPR025610 -
Lja5g0181 633 Coils Coil 428 455 - -
Lja5g0181 633 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 145 600 - -
Lja5g0181 633 SUPERFAMILY ACT-like 524 592 IPR045865 -
Lja5g0181 633 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 392 452 IPR036638 GO:0046983
Lja5g0181 633 MobiDBLite consensus disorder prediction 358 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0181 Lja-Chr5 1582971 1586489 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0181 57 605 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.872 5.18e-148 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lja5g0181 bHLH-MYC_N 1.4e-20 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0181 - - lja:Lj5g3v2244610.1 991.875