Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0178 ATGATTTCCCAAATTCTCGGCAAACAACCTGATGTTCCGAGCTCCTCTGGGCTCAAAAACCCCGCCGTGAAGCCGCCAATGCCGCAACGGAGAACCAGTCTTCGAATCCAAGCTCTGCAGATTGCCACTCAGGCTCGCCGCAACGCAGAGCTTGAACAAGACAAAGGGAAGAGACCCGCCGAGACGGTGGCTCCGGCGGCAGCTGCTAAGGTGAACAAGCGAGGCCGAGCTAGCAGCAAGGAGCAGAGTGTGGGTGAGGCAGAGGCAGAGGATGTTTCGGAGCAGCAGAGGAAGAGGAAGATGAAGATGAAGATGAAGATGAAGATGGTTGAGGGTGATGGAGACGATGTTTCGGTGGATTTGGGAAATGAGACTGATACTGACACCTGTTCCCCTCAGGTGAAGGAGACGATCAGGGTGTATACCAAGCACTACCTTCATTTTGTTCAGGAAGAGGAGAGGAGGTGTACTAAAGCGAAAGCTATTCGCGACGCGTTGAGGAAATCCGGGGAGCCTGTTCCGCCGGAAGCTTTGAAGATCACAATGTCGCGAGCTGATCTCAAAGCTATAACCCATATGAAGGAAAACAATGAGATATTGTTCCCTGAGAAACGAATCGGCGAAATTCCAGGTGTTCACGTTGGACATCAGTTCCATTCTCGAGCTGAAATGGTTGCTGTTGGTTTTCATAACCACTGGTTGAATGGCATTGATTTTATAGGCCAATCCTGTTCTAATGTCCACAGCAGCAGCAGCAGTGGCTACAAATTCCCGGTGGCTATCTCGGTTGTTATCTCCGGCATCGGCAATTTCAGGATCAGAAGCTGGAGAGGGCAAGGTGTGCCTGTTAGGGTGACTCGTGGTCTGAGAATTGGGAAAGGGAAAAACTCTCCTAAAGTCTACATATATGATGGCTTATACATGGTTACCAAAGATTGGATTGAGAAGGGAATTTCTGGATTTACAGTCTACAAGTTTAAGCTGAAGAGGCTTCAGGGACAGCCTGATCTAAGAACACAACAGGTTTATTTCACCAATGGGCGTGCACCTCAATCTGTGACACAGATACGAGGATTGGTCTGTGAAGATATAACTGGAGGTTTCACTTATCTCAAGTCTCTGAGGCTTGCGAAGAATGTGAAGCTTCCTCCCCCGACTGCGGCCGGATGCAATTGCAAAGGCAATTGTGCTGAGTCAACTACCTGTGAATGTGCAATGCGTAACGGGGGTGATATAACCTATGTGTCTAAGGAGGGTGGCAGGTTGGTGGAAGCCAAGGATGTTGTCTTTGAGTGTGGTCCCAATTGTGGTTGTGGTCCCAATTGTCTCAACAGGACTTCTCAAAATGGCATCAAATATCGTCTTGAGGTTTTCCGCACGGCAAAGAAAGGTTGGGCTGTTCGATCCTGGGATTACATACCTTCTGGAGCACCAATTTGTGAGTACACTGGAGTACTTGCAAGGACTGAAGATATAGACCGTGTGGAGGAAAACAGTTATATTTTTGAGATTGATTGCTTGCAAACAATCAAAGAGATTGCTGCAGTTCCTGCAAACCTTTTGGATGACCAAGGTTCTGATAATGGCCCGGAGTTTTGTATTGATGCAGCTTCGACCGGAAATATTTCTAGGTTCATTAACCACTGCTGTGAACCTAACCTGTTTGTTCAATGTGTTTTGAGCACACACCATGATTTGAGATTGGCTAAAGTGATGCTTTTTGCTGCTGACAACATAGCCCCTTTGCAGGAGCTGACATATGACTATGGCTATGAGCTTGATAGTGTCATGGGCCCTGACGGCAAGATAGTGCAGATGCCATGCTATTGTGGAGCCCCAAACTGCAGGAAGCGATTTAGCAGTCTCTCCTTCATTCGTAACACATTATCCCATCCTTTTCGGTCCTCTTCACCTCGGTGGATCGCTGGGCTGGGCTGA 1938 0.4804 MISQILGKQPDVPSSSGLKNPAVKPPMPQRRTSLRIQALQIATQARRNAELEQDKGKRPAETVAPAAAAKVNKRGRASSKEQSVGEAEAEDVSEQQRKRKMKMKMKMKMVEGDGDDVSVDLGNETDTDTCSPQVKETIRVYTKHYLHFVQEEERRCTKAKAIRDALRKSGEPVPPEALKITMSRADLKAITHMKENNEILFPEKRIGEIPGVHVGHQFHSRAEMVAVGFHNHWLNGIDFIGQSCSNVHSSSSSGYKFPVAISVVISGIGNFRIRSWRGQGVPVRVTRGLRIGKGKNSPKVYIYDGLYMVTKDWIEKGISGFTVYKFKLKRLQGQPDLRTQQVYFTNGRAPQSVTQIRGLVCEDITGGFTYLKSLRLAKNVKLPPPTAAGCNCKGNCAESTTCECAMRNGGDITYVSKEGGRLVEAKDVVFECGPNCGCGPNCLNRTSQNGIKYRLEVFRTAKKGWAVRSWDYIPSGAPICEYTGVLARTEDIDRVEENSYIFEIDCLQTIKEIAAVPANLLDDQGSDNGPEFCIDAASTGNISRFINHCCEPNLFVQCVLSTHHDLRLAKVMLFAADNIAPLQELTYDYGYELDSVMGPDGKIVQMPCYCGAPNCRKRFSSLSFIRNTLSHPFRSSSPRWIAGLG* 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0178 645 Pfam SET domain 464 590 IPR001214 GO:0005515
Lja5g0178 645 Pfam SAD/SRA domain 279 334 IPR003105 -
Lja5g0178 645 Pfam SAD/SRA domain 206 267 IPR003105 -
Lja5g0178 645 SUPERFAMILY SET domain 368 617 IPR046341 -
Lja5g0178 645 SMART PostSET_3 604 620 IPR003616 -
Lja5g0178 645 MobiDBLite consensus disorder prediction 1 97 - -
Lja5g0178 645 Gene3D SET domain 346 619 IPR046341 -
Lja5g0178 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 70 268 - -
Lja5g0178 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 269 619 - -
Lja5g0178 645 SMART G9a_1 202 334 IPR003105 -
Lja5g0178 645 Pfam Pre-SET motif 365 445 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja5g0178 645 SMART set_7 453 596 IPR001214 GO:0005515
Lja5g0178 645 MobiDBLite consensus disorder prediction 33 47 - -
Lja5g0178 645 ProSiteProfiles Post-SET domain profile. 604 620 IPR003616 -
Lja5g0178 645 MobiDBLite consensus disorder prediction 1 16 - -
Lja5g0178 645 ProSiteProfiles Pre-SET domain profile. 388 450 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja5g0178 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 70 268 - -
Lja5g0178 645 MobiDBLite consensus disorder prediction 74 97 - -
Lja5g0178 645 SUPERFAMILY PUA domain-like 189 349 IPR015947 -
Lja5g0178 645 ProSiteProfiles SET domain profile. 453 590 IPR001214 GO:0005515
Lja5g0178 645 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 269 619 - -
Lja5g0178 645 SMART preset_2 341 437 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Lja5g0178 645 Coils Coil 149 169 - -
Lja5g0178 645 ProSiteProfiles YDG domain profile. 182 330 IPR003105 -
Lja5g0178 645 Gene3D - 189 270 IPR036987 -
Lja5g0178 645 Gene3D - 271 345 IPR036987 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0178 Lja-Chr5 1557747 1561851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0178 193 619 EF-hand Containing Proteins AT5G13960 53.131 0.0 526
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja5g0178 SET 4.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0178 K11420 - lja:Lj5g3v2244670.1 975.311