Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0174 ATGGATTTCGATGAATATGATTATTTGGAGAAAACAGTTGAAAATCCTGAACTGTTGAAGGAGAATCAAAATGGTGGTGACGCAGGGGGAAAATCAGAAGAGAGACACCGCCGTAGTAGTCGGAGTTCCAAGCATAGGGATATTGAGAAGGACGATGGTTATGACAGGCAGAAAGAACGAGGCTCTTCGCGTCACCGTTCACGGTCGCGAGATGGGGACAGGGACAAGGACCGGCATAGAGGCTCTGAGGGGTATAGGGATAGGAAGAGAGGGAGGGATAGAGACAATGAAGATAAGCATGGAAGGGAGAGAGACAGAGATAGAGAAAGAGACCAACGAAGGGACCGTGCGAGTGAGAGCGAAAGGGAAAGGGAGAAAGAGAGCTTGCGGCGAAGCAGAAGTAGATCTGAAAGACTGGTTCCAAGTGAGCTGGATGGCAGAGACGGAGAGAAGAGTCGCGATAGGGACTATAGAGGCAATGGAAGAAACCAGGATAAGGATTATGGAGACAGAGAAAGGGCGAGGGAAACAATCGAACGCGATAGAGAAGGCACCACCAGACGACATAAAGAGAAAAAGGAAGAAAAGGCAGAACCTGAGGTTGATCCGGAAAGAGATCAAAGAACTGTATTTGCTTATCAGATTTCTCTTAAAGCGGATGAAAGAGATGTATATGAATTCTTCTCAAGGGCTGGCAAGGTGCGAGATGTTCGCTTGATTATGGACCGCAATTCAAGACGTTCTAAGGGTGTTGGGTATATTGAGTTCTATGATGCCATGTCCGTACCCATGGCAATAGCACTTTCAGGCCAACCTATTCTTGGTCATCCTGTGATGGTGAAGCCATCAGAAGCAGAAAAGAATTTGGTTCAGTCCACAGCATCTGTTGCTAATGGATCCACTGGACTTGGAGGTGGCCCTTATTCTGGGGGTGCTAGAAGAGTGTATGTTGGCAATCTGCATTTCAATATTACTGAAGCTGATCTGCGTGGGGTCTTTGAAGCATTTGGTCAGGTTGAACTGGTCCAGCTGCCTCCTGATGAAAGTGGGCAGTGCAAAGGTTTTGGCTTTGTGCAGTTTGCCCGTCTTGAAGATGCAAGAAATTCCCTGGGCTTGAATGGCCAATTGGAGATAGGTGGCAGGACTATCAAGGTATCAGCTGTTACTGATCAAAATGGTATGCAAGAAGCTGGAGGAAATGCTGGTGATTTTGATGATGATGAAGGTGGTGGCTTGTCCTTGAATGCATCTTCTCGAGCATCACTCATGCAGAAGTTGGATCGTAGTGGCACTACACCAAGCATGGTTGGTTTCCTTGGTGATTCTGCTGTCAACAACACAAGCCTTAACCTGCCAGTTGGAGGTCTCCAAATTCCCACAGCTACAATTCCTTCAGTAGATACTATTGGTGTTCCAAGTGAATGCTTAATGTTAAAGAATATGTTTGACCCCAAAGCTGAGACGGAACCGGATTTTGATTTGGATATTAAAGAAGATGTTGAAGCAGAATGCTCTAAATTTGGGAAGTTAAAGCACATATATGTTGATAAGAAAAGTGCTGGTTTTGTCTACTTAAGATTTGAAGCTACTCAAGCTGCAATAGGTGCCCAAAGGGCCTTGCATGGAAGATGGTTTGCAGGGAAGATGATCACTGCAAGCTTCATGGTACCCCAGTCATATGAGGATAGATTTCCAGAGAGCAGATAA 1707 0.4575 MDFDEYDYLEKTVENPELLKENQNGGDAGGKSEERHRRSSRSSKHRDIEKDDGYDRQKERGSSRHRSRSRDGDRDKDRHRGSEGYRDRKRGRDRDNEDKHGRERDRDRERDQRRDRASESEREREKESLRRSRSRSERLVPSELDGRDGEKSRDRDYRGNGRNQDKDYGDRERARETIERDREGTTRRHKEKKEEKAEPEVDPERDQRTVFAYQISLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQPILGHPVMVKPSEAEKNLVQSTASVANGSTGLGGGPYSGGARRVYVGNLHFNITEADLRGVFEAFGQVELVQLPPDESGQCKGFGFVQFARLEDARNSLGLNGQLEIGGRTIKVSAVTDQNGMQEAGGNAGDFDDDEGGGLSLNASSRASLMQKLDRSGTTPSMVGFLGDSAVNNTSLNLPVGGLQIPTATIPSVDTIGVPSECLMLKNMFDPKAETEPDFDLDIKEDVEAECSKFGKLKHIYVDKKSAGFVYLRFEATQAAIGAQRALHGRWFAGKMITASFMVPQSYEDRFPESR* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0174 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 313 390 IPR000504 GO:0003723
Lja5g0174 568 TIGRFAM SF-CC1: splicing factor, CC1-like family 85 565 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lja5g0174 568 CDD RRM1_RBM39_like 209 281 - -
Lja5g0174 568 MobiDBLite consensus disorder prediction 44 206 - -
Lja5g0174 568 SUPERFAMILY RNA-binding domain, RBD 313 561 IPR035979 GO:0003676
Lja5g0174 568 Gene3D - 309 417 IPR012677 -
Lja5g0174 568 SUPERFAMILY RNA-binding domain, RBD 203 312 IPR035979 GO:0003676
Lja5g0174 568 Coils Coil 175 195 - -
Lja5g0174 568 Gene3D - 469 568 IPR012677 -
Lja5g0174 568 CDD RRM3_RBM39_like 473 555 - -
Lja5g0174 568 MobiDBLite consensus disorder prediction 1 206 - -
Lja5g0174 568 PANTHER CC1-LIKE SPLICING FACTOR 1 564 - -
Lja5g0174 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 315 384 IPR000504 GO:0003723
Lja5g0174 568 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 218 278 IPR000504 GO:0003723
Lja5g0174 568 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 285 IPR000504 GO:0003723
Lja5g0174 568 Gene3D - 142 294 IPR012677 -
Lja5g0174 568 SMART rrm1_1 475 553 IPR000504 GO:0003723
Lja5g0174 568 SMART rrm1_1 314 386 IPR000504 GO:0003723
Lja5g0174 568 SMART rrm1_1 209 281 IPR000504 GO:0003723
Lja5g0174 568 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 404 492 IPR029123 -
Lja5g0174 568 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 564 - -
Lja5g0174 568 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0174 Lja-Chr5 1526008 1538534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0174 209 376 Eukaryotic Initiation Factors Gene Family AT4G34110 28.235 6.57e-13 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0174 K13091 - gmx:100789839 714.916