Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0170 ATGTTATCACAGTTAATGAACCTATTGAGGGCGTGCTTTCGGCCAGGTTTGGATGGAAGATATGCACGCTCAGGATCAGATGCTGGAGGTAAACAGGATGGACTATTGTGGTACAAGGACTCGGGGCAGCACTTGAATGGCGAATTTTCAATGGCTGTTGTTCAAGCCAATAACTTGCTGGAGGATCAGAGCCAGATTGAATCAGGCAGTTTGTGCTCCCATGAGTCCGGCCCGTGTGGAACTTTTGTCGGTGTCTATGACGGGCATGGAGGGCCGGAGACATCGCGGTTTATCAATAATCACCTATTTCAACATCTCAAGAGATTTACTTCAGAGCAACAATCAATGTCAGTGGATGTTATTCGCAAGGCATTCCAAGCAACTGAAGATGGGTTTATGTCAGTGGTTGCTAAACAGTGGCCATTGGCACCACAAATTGCAGCTGTAGGGTCATGCTGTCTTGTTGGTGTTATTTGTAATGGAACTCTTTTTATAGCAAATGCTGGAGATTCCAGGGCTGTTTTGGGAAGAGTTGTCAAGGCAACCGGTGAGGTTTTGGCCACACAATTATCGACAGAGCACAATGCATCAATAGAGTCTGTAAGACAGGAACTGCATTCTTTGCACCCTGACGATTCAAATATCGTTGTTCTAAAGCATAATGTATGGCGTGTGAAGGGCATTATTCAAATTTCTAGATCTATTGGTGATGTGTATTTGAAAAAGGCTGAGTTCAACAGAGAACCATTATATGCTAAGTTTCGTCTTCGTGAGCCGTTTAAGAGGCCAATTCTGAGCTCAGAACCATCAATTACAGTGCATCAGTTGCAGCCACATGACCAATTTATTATATTCGCGTCTGATGGGCTCTGGGAGCACCTTAGCAATCAAGAAGCAGTTGATATAGTTCAAAACAGTCCCCGTAGTGGAAGTGCAAGGAGGCTGGTGAAAACTGCACTTCAAGAGGCAGCAAAGAAGAGAGAAATGAGATATTCCGATTTAAGGAGAATTGACAGGGGAGTTCGTCGTCATTTCCATGATGATATCACTGTGATTGTTGTGTATCTTGATTCAAATCTCATGAGTAGGGCAAGCACTGTGAAGTTCCCTAGTGTTTCTATTAGAGGTGGTGGTATTAGCCTGCCTCATAACACACTTGCACCTATTGGTGGTACCTGA 1179 0.4419 MLSQLMNLLRACFRPGLDGRYARSGSDAGGKQDGLLWYKDSGQHLNGEFSMAVVQANNLLEDQSQIESGSLCSHESGPCGTFVGVYDGHGGPETSRFINNHLFQHLKRFTSEQQSMSVDVIRKAFQATEDGFMSVVAKQWPLAPQIAAVGSCCLVGVICNGTLFIANAGDSRAVLGRVVKATGEVLATQLSTEHNASIESVRQELHSLHPDDSNIVVLKHNVWRVKGIIQISRSIGDVYLKKAEFNREPLYAKFRLREPFKRPILSSEPSITVHQLQPHDQFIIFASDGLWEHLSNQEAVDIVQNSPRSGSARRLVKTALQEAAKKREMRYSDLRRIDRGVRRHFHDDITVIVVYLDSNLMSRASTVKFPSVSIRGGGISLPHNTLAPIGGT* 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0170 392 Gene3D - 37 366 IPR036457 -
Lja5g0170 392 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 6 385 - -
Lja5g0170 392 PANTHER ALPHABET, ISOFORM E-RELATED 6 385 - -
Lja5g0170 392 CDD PP2Cc 49 356 IPR001932 -
Lja5g0170 392 ProSitePatterns PPM-type phosphatase domain signature. 82 90 IPR000222 GO:0043169
Lja5g0170 392 SMART PP2C_4 40 354 IPR001932 -
Lja5g0170 392 ProSiteProfiles PPM-type phosphatase domain profile. 48 356 IPR001932 -
Lja5g0170 392 Pfam Protein phosphatase 2C 77 326 IPR001932 -
Lja5g0170 392 SUPERFAMILY PP2C-like 57 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0170 Lja-Chr5 1460882 1464061 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0170 1 388 PP2C-type Phosphatase Gene Family AT4G38520 75.773 0.0 629
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0170 - K01102 gmx:100790374 691.034