Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0157 ATGTCAGTTGTTGGAACTTCTGGAAAGAAAACCAGAGGAAGACAAAAGATAGAGATGAAAAGAATAACTAATGAGAGTCATCTTCAAGTTACTTTCTCGAAGCGCCGTACTGGGCTCTTCAAGAAAGCTAGCGAGCTATGCACCCTTTGTGGTGCAGAGCTTGCTCTCATTGTTTTCTCACCTGGTGGGAAGGCCTTCTCCTTTGGCCACCCCAGCATGGAGGCTGTCATTCAACGCTACGTATCCCATGCCCCATACCAAACCTCCAGTACCATGTGGTACATTGAGGCTCAACGAAGAACCAACGTGCTTGAGCTCAACGCGCAACTCACTCATATCAACAACCAACTAGAATCCCACAAGAAGCATGGCGAGGAGCTGAACCGCCTATGCAAGACGACCCAAGCCCAATTCTGGTCGGCTAGTCAAGTTGAGGAGATGGACAAGTCTCAACTTGAGAAATTTAGGGAGGCACTGGATGAGCTCAAGAAGCGTGTCACTAGCTATGGTGCTACTGCAGCTACCACTCCACCAACCCATCCATTTTTTACTGTTGCTAGTGGTTCCGCAAACGCCATGGTCCCTATCCACCACCCACTCCTACCCCCTCCTCAAGTTTTTCCACAACAGTTTTTTCAAGGGCCCATGCTACATGCTCATAACTTGTTTGGCTTCAATAATATGGGAGGGTATGGAGGAACCCATAGGTTCTTCTGA 717 0.484 MSVVGTSGKKTRGRQKIEMKRITNESHLQVTFSKRRTGLFKKASELCTLCGAELALIVFSPGGKAFSFGHPSMEAVIQRYVSHAPYQTSSTMWYIEAQRRTNVLELNAQLTHINNQLESHKKHGEELNRLCKTTQAQFWSASQVEEMDKSQLEKFREALDELKKRVTSYGATAATTPPTHPFFTVASGSANAMVPIHHPLLPPPQVFPQQFFQGPMLHAHNLFGFNNMGGYGGTHRFF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0157 238 ProSiteProfiles MADS-box domain profile. 12 72 IPR002100 GO:0003677|GO:0046983
Lja5g0157 238 Coils Coil 145 172 - -
Lja5g0157 238 SMART madsneu2 12 71 IPR002100 GO:0003677|GO:0046983
Lja5g0157 238 Gene3D - 24 91 IPR036879 GO:0003677|GO:0046983
Lja5g0157 238 PANTHER MADS BOX PROTEIN 11 169 - -
Lja5g0157 238 PRINTS MADS domain signature 14 34 IPR002100 GO:0003677|GO:0046983
Lja5g0157 238 PRINTS MADS domain signature 49 70 IPR002100 GO:0003677|GO:0046983
Lja5g0157 238 PRINTS MADS domain signature 34 49 IPR002100 GO:0003677|GO:0046983
Lja5g0157 238 SUPERFAMILY SRF-like 13 94 IPR036879 GO:0003677|GO:0046983
Lja5g0157 238 CDD MADS_MEF2_like 13 80 IPR033896 GO:0000977|GO:0045944
Lja5g0157 238 Gene3D - 92 171 - -
Lja5g0157 238 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 11 169 - -
Lja5g0157 238 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 68 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0157 Lja-Chr5 1364981 1365697 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0157 9 196 Type I MADS-box Gene Family AT5G60440 49.215 4.68e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g0157 SRF-TF 3.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0157 - - lja:Lj5g3v2059610.1 264.233