Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0153 ATGCAATCTATCCGAAAATCCTTCAAATCTTATGGTTCCGATAACAAACACTCTAGAAGGTTCTCCGCCACCGGAAACCCTGACACCGACCAAGAACACTACCCTATTCTTCTCGATCAGGAAACCCCTCACCACCACCACCACTCTTTTCCCATGGCCGGCGACGTCGTCGTCAAGATCAACGACGACGGAGACGACAGAGACCCTGCAACCATTGAAGCTAGCAAGATTTGGAGAGAGTCCAGCTACGATTTCTGGTCGAACAGAAACGGTTCCGGCGGTGACAATGCCCGCGAGGAGAGCTTTGATTTCCGCCGCAAGTCGGCGGAGGATCCGCCGTCGCAGCTGATTGGGAGGTTTCTCCACAAGCAGAAGGCGTCTGGTGATTTCTCGCTGGATATGGATTTGGAGATGGATGAGCTTCAGAATGAAGCCCGGGAGAAGCTGGCGCCGGTGGAGGAATCTCCGACGGTGACGCATCGGATATCCAGGGAGCTGAAGGTTTCGTTTGAGGAGCCTACGTCCAATGTGGTGGAGCCTGCTGGGGAGCATGTGAGGAGGAGGCCTAGTAAGGATTCGCCGTCGCTGGCGGATTTTCAGAGGCCTCCGCATCCGCCGCAGCATCATGAACGTCGCCGGTCGCCGTCTCCGGCGGGGAATGGTCGTGATGGGGAGGTTGTTATGTGCTCTGCCAACGCTTCGTTTGAACGGAACCTTTCTATGCAGAGGAGATCTACGTTGATGAAGACCAAAACGAAGTCCAGGTTGATGGACCCGCCTGAGGATCCGCCGGAGAAGAGGTCGGGCCGGGTTCCGAGGTCAGGGCAATTGTTATCCGGGTTGCTGGGTAGGAAGGGTGAGGAGGATGAAGATGATCCGTTTTTGGAAGAGGATCTTCCAGATGAGTATAAAAAGAATCACTTCAGCATCTGGGTTCTTCTTGAATGGTTGAGCTTGATTTTGATCATTGGTGCTCTGGTAACAACGCTTACCATTCCTCTTCTGAGAGACAAGAAGCTGTGGCAGCTCAACCTGTGGAAATGGGAGATGATGATCCTGGTTCTGATCTGTGGCAGGTTGGTTTCTGATTGGGTGATAAGGATTGCTGTTTTCTGCATTGAGAGGAATTTCCTTTTGAGGAAGAGGGTGCTTTATTTTGTGTATGGGGTGAAGAAGCCTGTTCAAAAGTGCATGTGGTTGGGGCTTGTTTTGGTTGCATGGCATCTCTTGTTTGATAAGAGAGTTGAGAGGGAGACTCGGGGTAATTTCCTTAAAAATGTCACCAAGGTCTTGATTTGTTTCCTTGTGGGTACTGTGGTGTGGTTGGTGAAAACCCTCATGGTCAAGGTTCTGGCTTCTTCTTTCCATGTTAGCACATACTTTGATAGGATTCAGGAGTCACTGTTTAACCAATTTGTGATTGAAACACTTTCTGGGCCGCCTCTGATTGAGCTTCGAAAGGCTGAGGAGGAGGAGGAAAGGCTTGCTGATGAGGTTCAGAAGCTGCAGAGTGCTGGCGTTACAATTCCCCCTGATCTTAGAGAGTCTGCATTCTCTAACATCAAGAGTGGGAGGTTGAGGAGTGGAATGCTACAGAAAAGCCCCAGAGTTAAGAGTGGCAAGTTTTCGCGGCCACTTTCTAAGGAGAGTGATGAGGGGAATGGGATAACTATTGATCATCTGCATATGCTGAATCCAGATAATGTCTCTGCCTGGAACATGAAAAGGTTGATTAACATGGTCCGGCACGGGACCCTTTCTACATTGGACGAGCAGATAATTGATTCGCCTAATGATGATGAGAATGCCACACAGATTAGAAGTGAAAATGAGGCAAAAGCAGCCGCAAAGAAAATCTTTCAGAATGTTGCAAGGCGTGGGTGCAGGTTTATATGCGTGGATGACTTGAGGCGTTTTATGCGAGAAGATGAAACTCTAAAAACCGTAAATCTCTTTGAAGGAGCCTCTGAAACTGGGAAAATCAGCAAAGCAGCCTTGAAGAACTGGGTGGTGAATGCCTTTAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGATACCAAAACAGCAGTGAACAAACTTCATCGGATGCTCAATATCTTAGTTGCCATTGTTATATTGGTTATTTGGCTCTTGATAATGGAAATTGCCACCACCAAATTTCTTCTTTTTGTGAGCTCACAGCTTGTCTTGGTTGCATTTGTATTTGGAAACACCTGCAAGACCGTGTTTGAAGCCATCGTTTTCTTATTTGTCATGCACCCGTTTGATGTGGGAGATAGATGTGAAATTGATGGGGTCCAGATGGTTGTAGAAGAAATGAACATATTGACAACCGTATTTCTGAGATATGATAATCAGAAGATTATGACCCCTAACAGTGTCCTTGCCACCAAGTCCATCCATAATTTCTACCGTAGTCCTGACATGGGAGATGCTATTGAATTCTGTATACATGTATCTACCCCTATTGAAAAGATTTCTCTTATGAAACACAGAATAGTGAGTTACATTGATAACAAGAAGGAGCACTGGTATCCTTCACCTTTTATAGTGTTCAAGGATCATGAACAGCTAAACATGGTGAGAATGGCGATCTGGCCAACTCACAGAATGAACTTCCAAGACATGGGGGAAAGGTTTGTCAGAAGATCCCTTTTGCTTGAAGAAATGATCAAGATTTTCCGGGAGCTTGACATTCATTACCGTCTCCTGCCTCTCGACATTAACGTTAGAGCTTTGCCTACCACTTCTGAAAGGCTTCCACCTAGTTGGGCAAACATCACAAACTGA 2793 0.4705 MQSIRKSFKSYGSDNKHSRRFSATGNPDTDQEHYPILLDQETPHHHHHSFPMAGDVVVKINDDGDDRDPATIEASKIWRESSYDFWSNRNGSGGDNAREESFDFRRKSAEDPPSQLIGRFLHKQKASGDFSLDMDLEMDELQNEAREKLAPVEESPTVTHRISRELKVSFEEPTSNVVEPAGEHVRRRPSKDSPSLADFQRPPHPPQHHERRRSPSPAGNGRDGEVVMCSANASFERNLSMQRRSTLMKTKTKSRLMDPPEDPPEKRSGRVPRSGQLLSGLLGRKGEEDEDDPFLEEDLPDEYKKNHFSIWVLLEWLSLILIIGALVTTLTIPLLRDKKLWQLNLWKWEMMILVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVKKPVQKCMWLGLVLVAWHLLFDKRVERETRGNFLKNVTKVLICFLVGTVVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLIELRKAEEEEERLADEVQKLQSAGVTIPPDLRESAFSNIKSGRLRSGMLQKSPRVKSGKFSRPLSKESDEGNGITIDHLHMLNPDNVSAWNMKRLINMVRHGTLSTLDEQIIDSPNDDENATQIRSENEAKAAAKKIFQNVARRGCRFICVDDLRRFMREDETLKTVNLFEGASETGKISKAALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNILVAIVILVIWLLIMEIATTKFLLFVSSQLVLVAFVFGNTCKTVFEAIVFLFVMHPFDVGDRCEIDGVQMVVEEMNILTTVFLRYDNQKIMTPNSVLATKSIHNFYRSPDMGDAIEFCIHVSTPIEKISLMKHRIVSYIDNKKEHWYPSPFIVFKDHEQLNMVRMAIWPTHRMNFQDMGERFVRRSLLLEEMIKIFRELDIHYRLLPLDINVRALPTTSERLPPSWANITN* 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0153 930 MobiDBLite consensus disorder prediction 203 218 - -
Lja5g0153 930 MobiDBLite consensus disorder prediction 238 294 - -
Lja5g0153 930 Gene3D - 755 804 IPR023408 -
Lja5g0153 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 4 162 - -
Lja5g0153 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 160 927 - -
Lja5g0153 930 MobiDBLite consensus disorder prediction 1 37 - -
Lja5g0153 930 MobiDBLite consensus disorder prediction 534 553 - -
Lja5g0153 930 SUPERFAMILY Sm-like ribonucleoproteins 745 804 IPR010920 -
Lja5g0153 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 4 162 IPR016688 -
Lja5g0153 930 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 160 927 IPR016688 -
Lja5g0153 930 Coils Coil 482 505 - -
Lja5g0153 930 MobiDBLite consensus disorder prediction 173 225 - -
Lja5g0153 930 MobiDBLite consensus disorder prediction 96 111 - -
Lja5g0153 930 PIRSF Memb_At2g17000 34 930 IPR016688 -
Lja5g0153 930 MobiDBLite consensus disorder prediction 254 269 - -
Lja5g0153 930 MobiDBLite consensus disorder prediction 88 111 - -
Lja5g0153 930 Pfam Mechanosensitive ion channel 697 901 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0153 Lja-Chr5 1306276 1310858 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0153 55 926 Mechanosensitive Ion Channel Family AT1G78610 57.456 0.0 953
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0153 K22048 - gmx:102665658 1385.55