Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0146 ATGGGTCGTGGAAGAATACCTATGGAACTGATTAAGAAGGAAAAAAATCGAGAAACAACCTTTAAGAAGAGAAAAGATGGGTTGCTGAAAAAATTTAATGAGTTTTCCATTCTTTGTGATGTTGAAGCCGCTGCAATTATCTATGCCCCTAATTCTGCTGAACCTGAAACATGGTCATGGCCCCCAGAGGACCCAAGCAAATTTCATCACGTCATTCAGAAATATCAGAACACAACTAGTGATAGGCGTGCCAAGATGTTTGGTGTGCATGAGTATTTTGATGATAGGATCAAAAAAGTTGAAGGGGAGATTTCCAAATTGTACAAAAACAAGATGAAGGTGATGTACCCTGAATGGGATGCATCTTTGAATAATTTGGGGGAAGAACAATTGAGGATTATGATTAACTTTTTGGATGCTAAGCTTGATGCATGCAATGCAAGGATGAATATGCTAAAAGGAAAAGAAGTAGCAGAATCAATTCCTCCTTTTTTGGACCCAAATCAGAATAGCTACCTCAATTATCTCATGATGCAGAACATGAATCCAATTGGTGATAGCTACAATACATTTCAGATTGGTGAGAGCTCTCAACCTGCTTCCATGCTTCAATTGATGGGAAATGATGTTGTAACAGGTGATGATCCTAGAACTGGTGGTGTGCTGGAAGTGAAGGAGTATGGAGAAGCTGAAGCAAACAATCAAATTCAAAACATGAATCCAGCAGGTTATTATGATGGAAATTATATTCAGGCAATGCAGCAGCAACATGCTCTTTCTTCTGAGAACCTGCACGATCAAGGAGCTTACCAAACTCTGACAGATTATCCATTGTATGATGAATTCTACCAGCCTAATGGATTATATGACACTGACATGCAGCTCCAAGCTCAAATCTTCAACTATATGCATGGAAGGAAGTAG 924 0.3907 MGRGRIPMELIKKEKNRETTFKKRKDGLLKKFNEFSILCDVEAAAIIYAPNSAEPETWSWPPEDPSKFHHVIQKYQNTTSDRRAKMFGVHEYFDDRIKKVEGEISKLYKNKMKVMYPEWDASLNNLGEEQLRIMINFLDAKLDACNARMNMLKGKEVAESIPPFLDPNQNSYLNYLMMQNMNPIGDSYNTFQIGESSQPASMLQLMGNDVVTGDDPRTGGVLEVKEYGEAEANNQIQNMNPAGYYDGNYIQAMQQQHALSSENLHDQGAYQTLTDYPLYDEFYQPNGLYDTDMQLQAQIFNYMHGRK* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0146 307 CDD MADS_SRF_like 2 61 IPR033897 GO:0000981|GO:0000987|GO:0045944
Lja5g0146 307 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Lja5g0146 307 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Lja5g0146 307 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Lja5g0146 307 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 51 IPR002100 GO:0003677|GO:0046983
Lja5g0146 307 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL82 3 192 - -
Lja5g0146 307 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lja5g0146 307 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lja5g0146 307 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lja5g0146 307 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lja5g0146 307 PANTHER MADS BOX PROTEIN 3 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0146 Lja-Chr5 1234320 1235243 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0146 1 148 Type I MADS-box Gene Family AT5G55690 35.065 2.17e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lja5g0146 SRF-TF 5.5e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0146 - - lja:Lj5g3v2258490.1 621.313