Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0145 ATGGAGAATGACAACACCGCCGCCGCCGACAACAACACCGCCACCGCCGCCGTCACCGTCACGGCCAAAACCGGTTCAGGAGAAGTTGTGAAATCCACCAACCACAACCATGAAGAAGAGCATTCCAATTCCAATGGCGAGGAGCACATGACAGAGAAACTGGAAGAAGAAGAAAATCGAGAGGAAGGTGAAGAAGAAGAAGAAGGAGAAGGAGGAGAGCAGCCAACTGGATCTGCACCCAACCCTCGCCAGCCTTCCAGAACCCCTTTCTCCAATCTCAGCCAGGTCGACGCTGACCTCGCCCTCGCTCGAACCCTTCAGGAGCAGGAAAGGGCATACATGATGCTGAGAATGAATAATGATGGAAGTGACTATGGAAGTTGGGAGGGTGGAAGCTATTTGCATGATGAAGGGGATGATTTTGATGATCTGCATGATGGGAGTGATGTGGATGAGGATGAGGATGGCGATGAAGATGATGGCGATGAGGAGGGATATGAGACTGAAGATGCATTTGATGTCCATGCTCATGCTGGCGCTGGAGAACATCCAATCATTGAATTTGACCCAGATGTGTTTTCAAGTGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCTGCTAGGCTGTTAGCTCTTGCTGGGATACATGATGTGGAGCCTGAGGACATGGAGGAGCATGGTGGTAATTCACAGGATGCTTGGGAGGATGTTGATCCAGACGAACTTTCCTACGAGGAACTACTAGCATTGGGTGAAGTAGTTGGAACTGAAAGCAGAGGTCTTACAACAGATACTATTGCCTCTTTGCCTTCAATCAAGTACAAGACTGGGAATGATCAACATGGAAGCAATGATTCGTGTGTTATTTGTCGGGTGGACTATGAGGATGACGAGTCCTTGACAGTTCTTTCCTGCAAACATCTGTACCATCCTGAGTGCATTAACAATTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCTTCTGGGAGCAACTTATAG 1035 0.4821 MENDNTAAADNNTATAAVTVTAKTGSGEVVKSTNHNHEEEHSNSNGEEHMTEKLEEEENREEGEEEEEGEGGEQPTGSAPNPRQPSRTPFSNLSQVDADLALARTLQEQERAYMMLRMNNDGSDYGSWEGGSYLHDEGDDFDDLHDGSDVDEDEDGDEDDGDEEGYETEDAFDVHAHAGAGEHPIIEFDPDVFSSDEAYARALQEAEEREMAARLLALAGIHDVEPEDMEEHGGNSQDAWEDVDPDELSYEELLALGEVVGTESRGLTTDTIASLPSIKYKTGNDQHGSNDSCVICRVDYEDDESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSNL* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0145 344 SUPERFAMILY RING/U-box 284 338 - -
Lja5g0145 344 Pfam Ring finger domain 291 333 IPR001841 -
Lja5g0145 344 MobiDBLite consensus disorder prediction 123 166 - -
Lja5g0145 344 MobiDBLite consensus disorder prediction 57 72 - -
Lja5g0145 344 MobiDBLite consensus disorder prediction 32 56 - -
Lja5g0145 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 340 IPR013083 -
Lja5g0145 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 342 - -
Lja5g0145 344 CDD RING-H2_PA-TM-RING 293 333 - -
Lja5g0145 344 MobiDBLite consensus disorder prediction 77 95 - -
Lja5g0145 344 Coils Coil 47 67 - -
Lja5g0145 344 MobiDBLite consensus disorder prediction 1 31 - -
Lja5g0145 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Lja5g0145 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 39 342 IPR043312 -
Lja5g0145 344 MobiDBLite consensus disorder prediction 1 96 - -
Lja5g0145 344 SMART ring_2 293 333 IPR001841 -
Lja5g0145 344 MobiDBLite consensus disorder prediction 142 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0145 Lja-Chr5 1224851 1230353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0145 70 237 C3H Transcription Factor Family AT3G19910 51.429 1.50e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0145 K19045 - gmx:100306465 433.335