Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0139 ATGTCTTCCGGCAGCGGCGGAATTAAGCCGTTCTTCTGCCACGTGTGCAGTCGGAGATTCACCTGCTCCGACGATGACTCCGAGCCTTTCTGCCCGATCTGCCTCGAAGGTTTTGTCGAAGAATTGCCGCCAAATAATCCCAACCCTAACCCTAACGTCGCATTGCATTTCGGCTCCGACTCTTCCTCCGATTCCGATTTCCCCTTCCATCCTCTCTCCCTTTTCCCTCTCTTGTTGTCCTCCGCCGTCGACTTCCAGAACCCTCACTCCGGTACCCGACCCGAATCGGACATGTTCGACCCGATTCTCTTTCTCCAGAACCACCTCCAAGGCCTTCGCGCTGACGGAGCCAACGTTCAGTTCGAGGTTGACCACCCTGGCGAACCCGGGCTTCGCCTCCCTGCCAACCTCGGCGATTACTTTCTTGGCCCCGGGTTGGAGCAGTTGATCCAGCAGCTCGCCGAGAATGATCCGAACCGTTACGGGACGCCGCCGGCGTCGAAGGACGCCATTGAGAAGCTGCCGACTGTGACCGTGGATGATGAGCTGCTGAGCTCGGAGCTGAACCAGTGTGCGGTTTGTCAGGACGAGTTTGAGAAGGGTACGCAGGTGAAGCAGATGCCTTGCAAGCATGTGTACCATGATGAGTGCTTGCTCCCCTGGCTTCAGTTGCACAATTCTTGCCCTGTGTGTCGGTATGAGTTGCCCACTGACGATGCTGATTATGAGAATCGGTCACAGGGGGACGGTGGTGATGGGTCTGGGTCTGTTGGTGAGGGTGGTAGTGGTGGCAGTGGTGGCGGTGGAGGGGGAAATAGACCTGTTCACAGGACTTTCAGAATATCTTTGCGGTATCCTTTTGGTGGAGGTGGAGGTGACTCTGCTCAGGACAGTGGTGAAAGAGGATGGGGAAATAGGCAGGAGGGTTTGGATTGA 936 0.5641 MSSGSGGIKPFFCHVCSRRFTCSDDDSEPFCPICLEGFVEELPPNNPNPNPNVALHFGSDSSSDSDFPFHPLSLFPLLLSSAVDFQNPHSGTRPESDMFDPILFLQNHLQGLRADGANVQFEVDHPGEPGLRLPANLGDYFLGPGLEQLIQQLAENDPNRYGTPPASKDAIEKLPTVTVDDELLSSELNQCAVCQDEFEKGTQVKQMPCKHVYHDECLLPWLQLHNSCPVCRYELPTDDADYENRSQGDGGDGSGSVGEGGSGGSGGGGGGNRPVHRTFRISLRYPFGGGGGDSAQDSGERGWGNRQEGLD* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0139 311 SUPERFAMILY RING/U-box 170 238 - -
Lja5g0139 311 SMART ring_2 191 231 IPR001841 -
Lja5g0139 311 ProSiteProfiles Zinc finger RING-type profile. 191 232 IPR001841 -
Lja5g0139 311 PANTHER OS06G0101300 PROTEIN 7 292 - -
Lja5g0139 311 MobiDBLite consensus disorder prediction 242 311 - -
Lja5g0139 311 CDD RING-H2_RNF126_like 190 232 - -
Lja5g0139 311 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 238 IPR013083 -
Lja5g0139 311 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Lja5g0139 311 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 292 - -
Lja5g0139 311 Pfam Ring finger domain 189 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0139 Lja-Chr5 1204830 1207978 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0139 135 243 C3H Transcription Factor Family AT5G01980 48.624 8.25e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0139 K11982 - lja:Lj5g3v2258550.1 493.041