Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0136 ATGTGCCCTCCTCCTGTCTCCACCAGCTCCTGCCGCTCAATCATTAGACCCCTGTTCCCTCTTTCTCCCTCTATTCAATCACTCCCTCACTCAACTCTCAATTCTTCTTCTTCATCTTCATCTTCATCTTCATCTTCATCAATTCAAATCCCTAGAAATTCACACTGTAACAAACCCTATTCTCACTTCTCTCTACACCTGCTAACTATGTCTAGCTCTGACGGGACCACCAACGGGTCAATGATTGACCCACAGAGGACCAACCAGCAACAGCAGTTATCAGTCAAGAAACCGCCCTCCAAGGACCGTCACAGCAAAGTCGACGGCCGCGGCCGCCGTATACGGATGCCAATCATCTGCGCCGCCCGCGTCTTCCAGCTCACGCGCGAGCTCGGCCACAAGTCCGATGGCCAGACCATCGAGTGGCTCCTCCGTCAAGCTGAGCCCTCCATCATCGCCGCCACCGGCACCGGCACCACCCCCGCCAGCTTCTCCTCCGTCTCTGTCTCGCTCCGCGGCGCCTCCAACAACTCCTCGCTCTCTTCTCCTTCGCTTGACCACAAACCCTTGCTTGCTCCTACTCCTACTCCGTTCATTCTCGGGAAGCGTATACGCACCGACGATGATTCCTCCCCCGCCGCCAAGGATGACTCTGTTGGACACTCGCTTGTTGGCTCTGCTGCTCCTGCTGGTTTGTGGGCTCTTCCTGCTAGGCCTGATTTTGGACAGATATGGAGCTTTGCTGCTGCCGCCGCCGCCGCGCCGGAAATGGTGGTGCAGCCGGCTGTGTCGGTGTCTGCTTCTCAGCAGCAGCAGGCTTCGTTCTTCATTCATCATCAGCAGCAGCAGCAACATCAGCAGCATCAGCAAGCCATGGGAGAAGCTTCGGCGGCGAGGGTGGGGAATTACCTTCCCGGGCATCTGAATTTGCTCGCTTCGTTGTCCGGTGGGCATGGAAATTCTGGTCGGAGAGACGATGACCATCGTTGA 990 0.5657 MCPPPVSTSSCRSIIRPLFPLSPSIQSLPHSTLNSSSSSSSSSSSSSIQIPRNSHCNKPYSHFSLHLLTMSSSDGTTNGSMIDPQRTNQQQQLSVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSVSVSLRGASNNSSLSSPSLDHKPLLAPTPTPFILGKRIRTDDDSSPAAKDDSVGHSLVGSAAPAGLWALPARPDFGQIWSFAAAAAAAPEMVVQPAVSVSASQQQQASFFIHHQQQQQHQQHQQAMGEASAARVGNYLPGHLNLLASLSGGHGNSGRRDDDHR* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0136 329 ProSiteProfiles TCP domain profile. 100 154 IPR017887 -
Lja5g0136 329 MobiDBLite consensus disorder prediction 196 220 - -
Lja5g0136 329 Pfam TCP family transcription factor 100 286 IPR017887 -
Lja5g0136 329 MobiDBLite consensus disorder prediction 74 96 - -
Lja5g0136 329 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 70 326 IPR005333 GO:0003700
Lja5g0136 329 MobiDBLite consensus disorder prediction 74 113 - -
Lja5g0136 329 MobiDBLite consensus disorder prediction 97 113 - -
Lja5g0136 329 MobiDBLite consensus disorder prediction 28 53 - -
Lja5g0136 329 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 70 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0136 Lja-Chr5 1194390 1196605 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0136 76 329 TCP Transcription Factor Family AT5G23280 64.844 1.51e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lja5g0136 TCP 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0136 K16221 - gmx:100799005 315.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0136 5 1194390 1196605 Lja5g0136 5 1194390 1196605 ECH