Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0132 ATGTCTCGGACATCCAATGTCCCACCTGCCTTCCACTCCATTAAATCTTTGCCTTCCGAGTTCAAGCTTAGTAATAATCCAAACACTGGTGTTGGGGGAAAACATGGAAACCATAGATTGAGGAGCACTGATCTGATTGCATCGAATGGTTCCGAAAATGGTGCATCGGTAGGGGAGGTTTCTAAGGGAGTTCACAACCGTGCTGGTGACATGAATCTTTTTGACGATGAATCGCCATACGGGGGGAGTGACAGATCATTCGAAGACAGGCTAGTGAATGCTGATGAAGAGTTGGTATCTGTTTCAAAGCCACTCCCATCAAGTTCAACGTCCTCTAGGGATAGCAGATGGAGTGATACAACTCCTTATGCTTCAAAGAAGAAGCTTCAGTCTTGGCTTCAACTCTCTAATGGGGATTGGGCGCTGGTGAAGATAATAACCACTTCGGGAACAGAATCTGTCATTTCACTGCCTGATGGGAAAGTTTTAAAGGTCAAAGATGAAAACTTGGTACCAGCAAATCCTGATATTCTTGATGGAGTTGATGACCTCATGCAACTTAGTTATTTAAATGAACCATCAGTTTTATACAACCTGCAATGTAGATACAATCAAAATATGATCTATACGAAAGCAGGGCCTGTTTTGGTTGCCATAAATCCCTTTAAGAAAATTCCTCTGTATGGTAATGACTATATTGAAGCCTACAAGCGTAAAGCAGTTGAAAGCCCTCATGTATATGCAATTACAGACACTGCCATCAGAGAAATGATACGGGATGAAGTTAATCAATCAATAATTATAAGTGGAGAGAGTGGAGCAGGGAAGACTGAGACAGCAAAAATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGAATAGAGTATGAGATATTAAAGACTAATCCAATACTAGAAGCCTTTGGTAATGGAAAAACACTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGCGAAACTGGAAAAATATCTGGTGCTAATATTCAAACATTTTTGTTGGAAAAGTCTAGAGTTGTCCAATGCAATGAAGGGGAAAGATCATATCATATATTTTATCAGCTATGCGCTGGAGCACCACCATCACTAAGGGAGAAGCTAAATCTGCAAAGTGCCCAAGACTATAAATATTTGAGGCAAAGCAGTTGTTATTCAATTACCGGGGTTGATGATGCAGAAGAATTTCACGCAGTCATGGAAGCTCTGGATGTTGTCCATATTAGCAAAGGAGACCAGGATAACGTATTTGCAATGCTTGCTGCAGTATTATGGTTAGGAAACATATCATTTACTGTGATCGATAATGAAAATCATGTTCAAGCTGTTGAGGATGAGGGGCTGTTCAGCGCTGCCAAGTTGATTGGCTGTGACATTGAAGATCTTAAGTTGACTTTAACAACTCGTAAAATGAAAGTTGGTAATGACATTATTGTCCAGAAGTTGACGCTTTCTCAGGCTATGGATGCAAGAGGTGCTTTGGCGAAATCAATATATGCATGTCTGTTTGATTGGCTGGTTGAGCAAATAAACAAGTCACTTGCAGTTGGCAAAAGACGCACTGGCAGATCTATCAGTATTCTAGATATTTATGGTTTTGAGTCATTCAATAGGAACAGTTTTGAGCAGTTCTGCATAAATTATGCAAATGAGAGATTACAGCAACATTTTAATCGTCATTTATTCAAGTTAGAACAGGAGGAATATATCCAAGATGGCATTGATTGGGCTAAAGTTGAATTTGAAGACAACCAAGACTGCCTTAATCTTTTTGAAAAGAAACCGCTTGGGCTACTATCTCTGTTAGATGAAGAGTCAACTTTCCCAAATGGCACGGATTTAACATTTGCTGACAAGCTTAAGCAGCATTTGAACTCTAATTCATGCTTCAAAGGAGAACGAGAAAAAGCCTTTACTGTGTCTCATTATGCAGGGGAGGTCACTTATGATACAACCGGATTCCTGGAGAAGAACAGGGACCTACTGCACTTAGATTCCATCCAACTGCTATCCTCAAGCAAGAGTCATCTTCCTCAGGTGTTTGCATCTCACATGCTTACTCAATCTGAGAAGCCTGTAGTTGGTCCCTTACACAAGTCAGGTGGGGCAGATTCCCAAAAGCTTAGTGTTGCTATGAAATTCAAGGGACAATTGTTTCAACTTATGCAACGTTTAGAGAGTACCACTCCACATTTTATTAGGTGCATCAAGCCCAATAACCTCCAATCACCTGGATCATATGAACAAGGCCTTGTACTGCAGCAGTTGAGATGTTGCGGGGTCCTCGAAGTGGTTCGAATATCAAGATCAGGCTTTCCAACTAGAATGTCTCATCAAAAGTTTGCCAGAAGATATGGGTTTCTTCTCCTTGAAAATGTCGCATCGCAGGATCCACTTAGTGTTTCCGTTGCTATTCTTCATCAGTTTAACATTTTGCCTGAGATGTTTCAAGTTGGCTTCACAAAATTATTCTTCCGAACAGGACAGATTGGTGTGCTTGAAGATACTAGAAATCGTACCCTCCATGGCATTTTACGTGTGCAAAGTTGCTTCAGGGGTTACAAAGCTCGATGTTACCGCAAGGAGCTTTGGAGAGGAATCACTACTCTTCAGTCATTTATTAGGGCAGAGAAAAGTAGAAAGAGATATGCAGCTTTACTTCAGAGACATAGAGCTGCTATTATTATACAGAAGCAGATGAAAACAGTAATTGCAAGAAACGGAATGAAAACTACTAATGATGCTGCAGTTGTTATACAATCATTTATTCGTGGTTGGTTAGTCAGAAGATTCTCAGGAGACATAGGTTTATTAAAATCCGGAGGCATGAAGACTAACGAGTCGGATGAGGTCCTCGTGAAGTCGTCTTTCTTAGCTGAACTACAACGAAGGGTACTTAAGGCTGAAGCTGGCCTAAGAGAGAAAGAAGAGGAAAATGACATCCTTCACCAACGTCTTCAACAGTACGAGAGCAGATGGTCTGAATATGAATTGAAGATGAAATCCATGGAAGAAGTATGGCAGAAGCAAATGAGATCCCTTCAATCTAGCCTCTCCATCGCTAAGAAGAGTCTTGCTATGGATGATTCTGAAAGAAATTCAGATGCGTCGGTTAATGCAAGTGATGAGAGGGAATACAGCTGGGATGTAGGAAGTAATCACAGGCGCCAAGAAAGCAATGGAACGAGATCTATGAGTGCTGGTTTGAGTGTTATCAGTAGGTTGGCTGAAGAATTCGAGCAAAGGAGTCAGGTATTTGGTGATGATGCGAAGTTCTTGGTTGAGGTAAAATCTGGCCAGATTGAAGCAAGTTTGGACCCAGACCAAGAGCTTAGAAGGTTAAAACAAATGTTTGAAGCTTGGAAAAAGGATTATAGTGGAAGACTGCGTGAAACAAAGCTTATTTTGCATAAACTTGGAAGTGAAGAAAGTTCAATTGAAAAAGCGAAGAAAAAGTGGTGGGTAAGAAGGAATAGTACAAGGATAAATTGA 3531 0.4078 MSRTSNVPPAFHSIKSLPSEFKLSNNPNTGVGGKHGNHRLRSTDLIASNGSENGASVGEVSKGVHNRAGDMNLFDDESPYGGSDRSFEDRLVNADEELVSVSKPLPSSSTSSRDSRWSDTTPYASKKKLQSWLQLSNGDWALVKIITTSGTESVISLPDGKVLKVKDENLVPANPDILDGVDDLMQLSYLNEPSVLYNLQCRYNQNMIYTKAGPVLVAINPFKKIPLYGNDYIEAYKRKAVESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNGKTLRNDNSSRFGKLIEIHFSETGKISGANIQTFLLEKSRVVQCNEGERSYHIFYQLCAGAPPSLREKLNLQSAQDYKYLRQSSCYSITGVDDAEEFHAVMEALDVVHISKGDQDNVFAMLAAVLWLGNISFTVIDNENHVQAVEDEGLFSAAKLIGCDIEDLKLTLTTRKMKVGNDIIVQKLTLSQAMDARGALAKSIYACLFDWLVEQINKSLAVGKRRTGRSISILDIYGFESFNRNSFEQFCINYANERLQQHFNRHLFKLEQEEYIQDGIDWAKVEFEDNQDCLNLFEKKPLGLLSLLDEESTFPNGTDLTFADKLKQHLNSNSCFKGEREKAFTVSHYAGEVTYDTTGFLEKNRDLLHLDSIQLLSSSKSHLPQVFASHMLTQSEKPVVGPLHKSGGADSQKLSVAMKFKGQLFQLMQRLESTTPHFIRCIKPNNLQSPGSYEQGLVLQQLRCCGVLEVVRISRSGFPTRMSHQKFARRYGFLLLENVASQDPLSVSVAILHQFNILPEMFQVGFTKLFFRTGQIGVLEDTRNRTLHGILRVQSCFRGYKARCYRKELWRGITTLQSFIRAEKSRKRYAALLQRHRAAIIIQKQMKTVIARNGMKTTNDAAVVIQSFIRGWLVRRFSGDIGLLKSGGMKTNESDEVLVKSSFLAELQRRVLKAEAGLREKEEENDILHQRLQQYESRWSEYELKMKSMEEVWQKQMRSLQSSLSIAKKSLAMDDSERNSDASVNASDEREYSWDVGSNHRRQESNGTRSMSAGLSVISRLAEEFEQRSQVFGDDAKFLVEVKSGQIEASLDPDQELRRLKQMFEAWKKDYSGRLRETKLILHKLGSEESSIEKAKKKWWVRRNSTRIN* 1177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0132 1176 MobiDBLite consensus disorder prediction 1038 1052 - -
Lja5g0132 1176 ProSiteProfiles IQ motif profile. 855 882 IPR000048 GO:0005515
Lja5g0132 1176 ProSiteProfiles IQ motif profile. 925 954 IPR000048 GO:0005515
Lja5g0132 1176 SMART MYSc_2a 173 852 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 MobiDBLite consensus disorder prediction 1038 1077 - -
Lja5g0132 1176 Gene3D - 361 420 - -
Lja5g0132 1176 PRINTS Myosin heavy chain signature 590 618 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 PRINTS Myosin heavy chain signature 537 565 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 ProSiteProfiles IQ motif profile. 878 905 IPR000048 GO:0005515
Lja5g0132 1176 Pfam Myosin head (motor domain) 181 839 IPR001609 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 Gene3D - 855 903 - -
Lja5g0132 1176 Gene3D - 904 946 - -
Lja5g0132 1176 PANTHER MYOSIN 9 1176 - -
Lja5g0132 1176 CDD MYSc_Myo8 193 839 IPR036022 -
Lja5g0132 1176 MobiDBLite consensus disorder prediction 99 121 - -
Lja5g0132 1176 MobiDBLite consensus disorder prediction 18 32 - -
Lja5g0132 1176 Gene3D Kinesin motor domain 182 780 IPR036961 -
Lja5g0132 1176 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Lja5g0132 1176 SMART iq_5 901 923 IPR000048 GO:0005515
Lja5g0132 1176 SMART iq_5 852 874 IPR000048 GO:0005515
Lja5g0132 1176 SMART iq_5 924 946 IPR000048 GO:0005515
Lja5g0132 1176 SMART iq_5 875 897 IPR000048 GO:0005515
Lja5g0132 1176 Coils Coil 971 1019 - -
Lja5g0132 1176 Gene3D - 547 741 - -
Lja5g0132 1176 Gene3D Myosin VI head, motor domain, U50 subdomain 422 719 - -
Lja5g0132 1176 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 899 IPR027417 -
Lja5g0132 1176 Pfam IQ calmodulin-binding motif 857 872 IPR000048 GO:0005515
Lja5g0132 1176 Pfam IQ calmodulin-binding motif 927 943 IPR000048 GO:0005515
Lja5g0132 1176 Pfam IQ calmodulin-binding motif 879 896 IPR000048 GO:0005515
Lja5g0132 1176 MobiDBLite consensus disorder prediction 68 87 - -
Lja5g0132 1176 MobiDBLite consensus disorder prediction 18 39 - -
Lja5g0132 1176 MobiDBLite consensus disorder prediction 102 121 - -
Lja5g0132 1176 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 9 1176 - -
Lja5g0132 1176 Gene3D - 784 852 - -
Lja5g0132 1176 ProSiteProfiles Myosin motor domain profile. 179 851 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0132 Lja-Chr5 1146781 1168126 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0132 7 1174 Myosins gene family AT1G50360 74.702 0.0 1777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0132 - - gmx:100801124 2057.34
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0132 5 1146781 1168126 Lja5g0132 5 1146781 1168126 ECH