Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0127 ATGTCGGAAGCACCGTCTCAGCCACCGGCTCCGTCAACGGAGACGCCGCCGTACTGGTGCTACCACTGCGAGAAGCGCGTCTCCATCGAAACACTCCCCAACCTCCCCGACGTCATCTGCGGCGAGTGCAAGAACGGATTCGTGGAATCCGTTCCCGCACCCTCTCGACGCTCTCCCTCTCCTCCGCCTGACTTCGGCAACCACTTCCTCCAAGTCCTCCGCCTTATCGCTCAGTCGGCGCGTGAAGACAACGACAACGAAAACGACGACGATGCTTCTCCTCCGCCGCCTCCAAACCGTTCGCCGGAGAATGATTTCCTCAGGATCCAGCTCGGCGGCTGGGACAACGACGAGGATGAAGACGAAGACGAGGGAGACAACGACGGCGAGGAGCACGAAGGCGCTGTGGAGGAGCAGGTGGATCGATCCGGCAACGAGGAAGATGAAGATCTGAGGCGGAGGAGGCGCGAGCTGCTGCGGCTTCGAATTAGGGATTTGGCGACCCGAACCCGAAGCATGCGGAACCGGATCTTGGATTGGGCTGACATTCTGATGGGAATGGAAGACAACTCCATAGAGTTTCGCCTCCAGGTACCGGAATCGGACCGGTACGTCGGGAACCCGGAGGATTACGTGGACGCGACGGAGTACGAGGCGTTGATGCAGATACTGGCGGAGAGCGACGGAGGTGGGAGGAAGGGAGCTCCGCCGGCGTCGAAGGCGGCGGTGGAAGCTCTGCCGACGGTGAAGATCATGTCGGAGAGTGATACTGTGGCGTGTGCTATTTGTAAGGACTTGATGGGTGTTGGAGAATCAGCTAAGAGGTTACCGTGTGGGCATCAGTACCATGGAGATTGCATTGTTCCATGGCTGAGTTCTAGAAATTCTTGCCCTGTTTGCAGGTTTCAGCTTCCAACGGATGACAAGGAGTTTGAGGAAGAGAGAGCTTCGGGTTCCGGTTCGGGTCGGGGTGGAGCTGCCACTACTTGA 990 0.5859 MSEAPSQPPAPSTETPPYWCYHCEKRVSIETLPNLPDVICGECKNGFVESVPAPSRRSPSPPPDFGNHFLQVLRLIAQSAREDNDNENDDDASPPPPPNRSPENDFLRIQLGGWDNDEDEDEDEGDNDGEEHEGAVEEQVDRSGNEEDEDLRRRRRELLRLRIRDLATRTRSMRNRILDWADILMGMEDNSIEFRLQVPESDRYVGNPEDYVDATEYEALMQILAESDGGGRKGAPPASKAAVEALPTVKIMSESDTVACAICKDLMGVGESAKRLPCGHQYHGDCIVPWLSSRNSCPVCRFQLPTDDKEFEEERASGSGSGRGGAATT* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0127 329 SUPERFAMILY RING/U-box 255 307 - -
Lja5g0127 329 MobiDBLite consensus disorder prediction 310 329 - -
Lja5g0127 329 MobiDBLite consensus disorder prediction 115 134 - -
Lja5g0127 329 SMART ring_2 260 300 IPR001841 -
Lja5g0127 329 Pfam Ring finger domain 260 301 IPR001841 -
Lja5g0127 329 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 32 317 - -
Lja5g0127 329 Pfam zinc-ribbon 18 50 IPR039525 GO:0061630
Lja5g0127 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 227 307 IPR013083 -
Lja5g0127 329 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 32 317 - -
Lja5g0127 329 MobiDBLite consensus disorder prediction 82 150 - -
Lja5g0127 329 ProSiteProfiles Zinc finger RING-type profile. 260 301 IPR001841 -
Lja5g0127 329 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0127 Lja-Chr5 1129656 1131038 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0127 171 313 C3H Transcription Factor Family AT5G01980 45.333 5.44e-33 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0127 - - adu:107467499 452.981