Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0119 ATGCTTGATAATGTTGACCATGTTCATGATTTCATCAATTCAACTCGGAGACTATGTTCTCGTCTTGGGGGTTGGGTTTCTGGTTTAATATCAAAACCTAAAGTTGGCTCAGAATTTGATGATTCACTTCATAGATTGGTTGAGAGAAGTCACAATTGTAATCTAGATTTCATGGATGAGTATATATATATTAGTTCATCGGATGATGATGACTTTGACTTGGAGGAGATAGACGATCCGAGGAGGACTCTCCCACAATGGGCTACTACTGAAAGGAATTCAGATTATGGTGGATTGGCTGGGCAGGGTAGTTCTTCAAGAGGTGCAAATAGTTCAAACGCAAGCTCTTCTAATGTTTATAATCATTCACAAGTCAAGCCCCATACAAAACCTGTGCCCAGCAGGAGTACACCGAATCACGGAGTTGCAGGAACAGGCCATCCTTCCTATCTTACCCATAATGGAAGTGCAAGTCAGCCTCAGACAGTTAGTTCCCGAGTTTTTAATAATTCTGCTGATTATGAGAGACTGTCATCTCAACAAGCTATCAAAAGGACCCTTCCTCCAGCATTTCAATCATCTGCAACAAGGGCTCTTCCATCTTCATCGTTTGCACCAGATAGCAGATTAAGCAATTTAAAAATGTTAGATAACATAAGCAGCAGACCTAGCACGTCCAGTGACAAGGGCTATATTCGTGTCAATCTCAGAGGCCCTGATGAAGATCGTTTCATGCATCAAAATGGTGGAATTAGGAATCTTCCGTCTTCTATGATGCTGGGAAAGGCTATAAATCCACTGTTTGCGAGTTCTAGTGAACCTCCAAACCGATCTGGAGGAGTTGATGAAAGGGACCCCGGAACTGACGAGAGATTAATTTTTGAGGCAGCATTAGAGGATCTCCATCAATTTCAGCATAGAAAAGAAACTGATTTACCTGCTGGTATAATGTCTGTCTCGCTTATGAGACATCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGCTTGGGGGGGATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGACTGCCCTCATCCTAATGCAGAGGCAGTTACAGTCAAAATGGAAAGCAGATGATACAGGCAATCATAAAGCTGAAGCCTTGAATTTGGATGATGAGGACGACAGCGGTGTTGTTGACGTAGAAAAGCTTGAAAAGATTGAAGAAGTACAGAAACTTGAAAAGATAGAAGAATTTGATGATGTTAAACCTATTTTAGAACCAAGTAGTTCTACACGGGCACCAAGTAGGAGAAGGCCAGCTGCTGGTACACTGGTTGTCTGCCCTGCAAGTGTTCTTCGGCAGTGGGCCAGGGAGCTTGATGAAAAAGTTGGAGATGAAAAACTTTCTGTTTTGGTTTATCATGGAGGCAATAGGACAAAGGATCATTTTGAACTTGCCAAATTTGATGTGGTTCTCACAACATATGCCCTTGTAACTAATGAAGTTCCAAAGCAACCACTAGTTGACGAGGAGGATGATGAAAAAAATGCGGAAAAATTTGGCGTATCACCTGAGTTTTTTGGGGGTAAAAAGAGGAAAAAGTCAGTTAATGGGAAGAAGAGTAAAAAAGGTAGAAATGGAATTGACAGTTCTTTTGATTGTGGTTCTGGTCCTCTTGCCAGAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAGACAATAAAGAATCATAGAACCCAGGTGGCTAGAGCTTGTTGCAGTCTTAGGGCCAAAAGAAGGTGGTGCTTATCTGGAACACCTATTCAAAATACTATTGATGATTTGTACAGCTACTTTAGGTTCCTGAAGTATGATCCCTATGCTGTATATAAATCATTTCTTAATACAATAAAAGTTCCGATCTCCAGAAATTCCGTTCATGGTTACAAGAAGCTTCAAGCAGTTTTGAGGGCCATAATGCTACGGCGTACAAAAGGAACTTTGATTGATGGGAAGCCAATAGTCGATTTACCTCCTAAAACAATTCAGCTGACTAAGGTTGATTTCTCCATTGAGGAGCGTTCCTTCTACAAAAAGTTGGAAGCAGATTCACGTTCTCAATTCAAGGCATATGCCGCTGCTGGGACAGTGAACCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCACCCGCGTCTTGTTAAGGATTATAATTCTAATTCTAATCCTGTTGGTAAAGATTCTGTTGAAATGGCAAAAACGCTTCCGAAGGAGATGCTGCTGAATCTATTTAATCGTATGGAAACAACCTTTGCTATATGTGGTTCCTGCGAGGACACACCCGATGACCCTGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCCGAGTATTTGACAGGTGATGATAACTTATGCCCTGCAAATGGGTGTAAAGAACAACTTGGTGAAGATCTTGTGTTTTCCAAAGAAACTTTGAGGAGTTGCCTCTCTGATGAGCTTGGTGGTAGCAGTACTGCAAATTCGGAGCCTTTTGATTATGAATCAGTACAGAAGGCAGATTATGAATCATCTAAAATCAAAGCTGTCCTTGAGGTTCTGCAGTCAAATTGTAACTTAAAAACTCCATCTTCTGATGGTAGTGGAGATTCACTATCTTCTGATTCATTTATTGAAGATTGTGACTCAGATGTTAAGGTTACAAAACACACAAGAAAATATTCAAAGTCCACAACTGAAGGACCAATAAAGGCTATAATTTTTTCCCAGTGGACCAGCATGTTGGACTTAGTTGAGGCATCACTGAAACAATCTCGTATACGATACAGGAGACTTGATGGGAGGATGAGTCTGCTTGCGAGGGACAAAGCTGTTAAGGATTTCAATACTAGAACTGAGATTACTGTCATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGCCATGTTATTCTTTTGGATCTTTGGTGGAATCCAACTACTGAAGATCAAGCAATTGATCGAGCACATAGAATTGGACAGACTCGCCCTGTTACTGTAACACGTATCACGATAAAAGATACTGTTGAAGACAGAATACTGGCTCTTCAGGAAGAAAAGAAAAAAATGGTTGCTTCTGCTTTTGGTGAAGACCATGCTGGCGGTTCTGCTACTCGCCTTACAGTGGAAGATCTCAAGTATCTTTTCATGGGAGTCTAG 3225 0.4096 MLDNVDHVHDFINSTRRLCSRLGGWVSGLISKPKVGSEFDDSLHRLVERSHNCNLDFMDEYIYISSSDDDDFDLEEIDDPRRTLPQWATTERNSDYGGLAGQGSSSRGANSSNASSSNVYNHSQVKPHTKPVPSRSTPNHGVAGTGHPSYLTHNGSASQPQTVSSRVFNNSADYERLSSQQAIKRTLPPAFQSSATRALPSSSFAPDSRLSNLKMLDNISSRPSTSSDKGYIRVNLRGPDEDRFMHQNGGIRNLPSSMMLGKAINPLFASSSEPPNRSGGVDERDPGTDERLIFEAALEDLHQFQHRKETDLPAGIMSVSLMRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMTALILMQRQLQSKWKADDTGNHKAEALNLDDEDDSGVVDVEKLEKIEEVQKLEKIEEFDDVKPILEPSSSTRAPSRRRPAAGTLVVCPASVLRQWARELDEKVGDEKLSVLVYHGGNRTKDHFELAKFDVVLTTYALVTNEVPKQPLVDEEDDEKNAEKFGVSPEFFGGKKRKKSVNGKKSKKGRNGIDSSFDCGSGPLARVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFLNTIKVPISRNSVHGYKKLQAVLRAIMLRRTKGTLIDGKPIVDLPPKTIQLTKVDFSIEERSFYKKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPRLVKDYNSNSNPVGKDSVEMAKTLPKEMLLNLFNRMETTFAICGSCEDTPDDPVVTMCGHVFCYQCVSEYLTGDDNLCPANGCKEQLGEDLVFSKETLRSCLSDELGGSSTANSEPFDYESVQKADYESSKIKAVLEVLQSNCNLKTPSSDGSGDSLSSDSFIEDCDSDVKVTKHTRKYSKSTTEGPIKAIIFSQWTSMLDLVEASLKQSRIRYRRLDGRMSLLARDKAVKDFNTRTEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKKKMVASAFGEDHAGGSATRLTVEDLKYLFMGV* 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0119 1074 Gene3D - 425 515 IPR038718 -
Lja5g0119 1074 MobiDBLite consensus disorder prediction 86 162 - -
Lja5g0119 1074 Pfam Zinc finger, C3HC4 type (RING finger) 774 810 IPR018957 GO:0046872
Lja5g0119 1074 Gene3D - 532 667 IPR038718 -
Lja5g0119 1074 Gene3D - 295 380 IPR038718 -
Lja5g0119 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 290 656 IPR027417 -
Lja5g0119 1074 CDD DEXDc_SHPRH-like 321 656 - -
Lja5g0119 1074 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 665 1071 IPR027417 -
Lja5g0119 1074 MobiDBLite consensus disorder prediction 73 162 - -
Lja5g0119 1074 ProSitePatterns Zinc finger RING-type signature. 789 798 IPR017907 -
Lja5g0119 1074 Pfam Helicase conserved C-terminal domain 918 1015 IPR001650 -
Lja5g0119 1074 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 336 618 IPR014001 -
Lja5g0119 1074 ProSiteProfiles Zinc finger RING-type profile. 774 810 IPR001841 -
Lja5g0119 1074 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 145 1072 - -
Lja5g0119 1074 SMART ring_2 774 812 IPR001841 -
Lja5g0119 1074 SMART ultradead3 317 633 IPR014001 -
Lja5g0119 1074 MobiDBLite consensus disorder prediction 528 548 - -
Lja5g0119 1074 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 760 824 IPR013083 -
Lja5g0119 1074 CDD SF2_C_SNF 916 1024 - -
Lja5g0119 1074 SUPERFAMILY RING/U-box 770 811 - -
Lja5g0119 1074 Pfam SNF2-related domain 324 734 IPR000330 GO:0005524|GO:0140658
Lja5g0119 1074 Gene3D - 671 1072 IPR027417 -
Lja5g0119 1074 SMART helicmild6 932 1015 IPR001650 -
Lja5g0119 1074 MobiDBLite consensus disorder prediction 267 287 - -
Lja5g0119 1074 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 902 1068 IPR001650 -
Lja5g0119 1074 PANTHER HELICASE-LIKE TRANSCRIPTION FACTOR CHR28 145 1072 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0119 Lja-Chr5 1040640 1049171 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0119 58 973 RAD5 or RAD16-like Gene Family AT1G50410 55.165 0.0 892
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lja5g0119 SNF2_N 1.4e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0119 - - lang:109335781 1461.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0119 5 1040640 1049171 Lja5g0119 5 1040640 1049171 ECH