Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0117 ATGGCGTCGCAGGGAAGGAAGAGGATCGACGCCGTCGATTCTCGTGCCGCCTCCGTTCTCGTTCGCTCCAGAGACGGCAGCGCTTTCGCCCGATGCGAAGAGTGTAACAAGAGTGTTCCTGTTGCACTCATCAGCATGCACAGTTGCAGCCTCGAAGCAAAGATCAAGATGAATCTCGATGCTCAGGTTATTGAACAGGCTAATGAAGCCAAGAAGACTGAGAGGAAGAAGCCTAGTTCTAAAGAACCAAAGGCAAAAAGGGCTAAAACTGAGAAGGCGAAGAAGGTCAAGGATCCTAACCAGCCAAAGCGTCCTCCCACTGCCTTCTTTGTCTTCTTGGATGATTTTAGAAAAGAATTTAAGGAAGCAAATCCTGGTTCAAAGGATGTCAAAAGGGTTGGCAAAGAGGGTGGGGAAAAGTGGAGGGCTATGACTGATGAAGAGAAGAAGCCTTATTTGGAAAAAGTTGCTGAGCTCAAGGAAGAATATGAGAAGGCTATGGCAAATTACAATGCTGCTGAAGATGAGGAAAAAGAGGAAGCTGATAAGGAAGCTGCTCCCACAGAAATTGAAGAGCTGACAGATGAGGAGTAG 594 0.4731 MASQGRKRIDAVDSRAASVLVRSRDGSAFARCEECNKSVPVALISMHSCSLEAKIKMNLDAQVIEQANEAKKTERKKPSSKEPKAKRAKTEKAKKVKDPNQPKRPPTAFFVFLDDFRKEFKEANPGSKDVKRVGKEGGEKWRAMTDEEKKPYLEKVAELKEEYEKAMANYNAAEDEEKEEADKEAAPTEIEELTDEE* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0117 197 MobiDBLite consensus disorder prediction 67 107 - -
Lja5g0117 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 188 - -
Lja5g0117 197 Coils Coil 56 76 - -
Lja5g0117 197 Coils Coil 149 183 - -
Lja5g0117 197 Pfam HMG (high mobility group) box 102 171 IPR009071 -
Lja5g0117 197 MobiDBLite consensus disorder prediction 171 197 - -
Lja5g0117 197 MobiDBLite consensus disorder prediction 67 101 - -
Lja5g0117 197 CDD HMGB-UBF_HMG-box 102 168 - -
Lja5g0117 197 SUPERFAMILY HMG-box 93 173 IPR036910 -
Lja5g0117 197 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 102 171 IPR009071 -
Lja5g0117 197 Gene3D High mobility group box domain 97 175 IPR036910 -
Lja5g0117 197 SMART hmgende2 101 172 IPR009071 -
Lja5g0117 197 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 3 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0117 Lja-Chr5 1024400 1026621 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Lja5g0117 HMG_box 4.7e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0117 K25507 - lja:Lj5g3v2262840.1 322.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0117 5 1024400 1026621 Lja5g0117 5 1024400 1026621 ECH