Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0109 ATGAATTGTCTTATGGGGTGTCAGTCTCAGTTGTGGGTAGTGACCATTGTGTTTTACACTTGCATTTTGATCCCATTGAAGGAACTCAAGGGGGCACTTGCAAGCCTGTTTGGTCTCTTCAGCAAAGACGTGGTGGAGTTCCCTGCAGTGATTCCATCGTTGCCGGTGGCGAGGTTTGAGGATTTGCGAAGGCAATGTTGTTGTGAAGGAGGTGATGATGATGAGTTGAGAGAGGAGATTTGCTCCATTTGCTTGGTGGAGTTTGAAGGGGAAGATGCAGTGAGCAAATTGGAAAGGTGTGGGCATGTGTTCCATCTCAATTGCATTGAACAATGGCTAGACTGTTGTCAATTCTCTTGCCCACTTTGTAGGTCCTTTTTATTTTCTCAACATGATCATGTCCACACAAACAAATAG 417 0.4508 MNCLMGCQSQLWVVTIVFYTCILIPLKELKGALASLFGLFSKDVVEFPAVIPSLPVARFEDLRRQCCCEGGDDDELREEICSICLVEFEGEDAVSKLERCGHVFHLNCIEQWLDCCQFSCPLCRSFLFSQHDHVHTNK* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0109 138 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 127 IPR013083 -
Lja5g0109 138 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 128 - -
Lja5g0109 138 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 128 - -
Lja5g0109 138 SUPERFAMILY RING/U-box 74 131 - -
Lja5g0109 138 Pfam Ring finger domain 81 124 IPR001841 -
Lja5g0109 138 SMART ring_2 81 123 IPR001841 -
Lja5g0109 138 ProSiteProfiles Zinc finger RING-type profile. 81 124 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0109 Lja-Chr5 980007 980447 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0109 8 129 C3H Transcription Factor Family AT4G38140 40.164 2.02e-20 79.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0109 - - pvu:PHAVU_007G012000g 154.451