Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0106 ATGGTGAACTTGATGGAATGGAAGGATCAGTTGCAGATGTGGCAGCAGCAGAATGGGAATGTGAATGTTGGTGTCCAGAGGGAAATGATGTATGTGAAAGTGATGACTGATGAACAGTTGGAAACTCTGAGGAAACAAATTGCAGTTTATGCCACCATTTGTGAGCAACTCATTGAGATGCACAGAACATTCTCAACTCAGCAGGATCTTGCAGGGGTTAGGCTAGGAAATATATACTTTGACCCATTGATGACATCTAGTGGCCACAAATTAACATCCAGACAGAGGTGGAATCCTACGCCCATTCAGCTTCAGATTCTTGAGAGTATATTTGATCAGGGAAATGGAACTCCAAATAAGGAAAAAATCAAGGAGATTGCTGCTGATCTGGTCCAGCATGGCCAAGTTTCTGAAACAAATGTCTATAATTGGTTCCAGAATAGGCGTGCTCGATCGAAAAGAAAACTACAAAATGTGGCACCTAGTACCACTGAATCAGAAGCAGACACTGAGGTTGATTCTAAGGACAGGAAGACAAAGCCAGAGGAATTTTATTCCCAGCAAAATAATGTAACTACTGAGGTTGATTTGCAGTGCTTGAATGATTCAGGTTCTAATAATAAACCATATTCAATGTTCCCATCAGATGGAAGTCTAAGCTCCACAAGAAAATTGAGTCATGTACCTGTTTTTGATGGGGTGCTATCAAACTCAAGGAGTGACTATCAAACTGGGAAAATGGGAGAAGATGAAAGTTACAATTTATACAAGCAAGCAGGAGACTATAATATGGAGGGTAGATATTTAGGTTAA 813 0.4034 MVNLMEWKDQLQMWQQQNGNVNVGVQREMMYVKVMTDEQLETLRKQIAVYATICEQLIEMHRTFSTQQDLAGVRLGNIYFDPLMTSSGHKLTSRQRWNPTPIQLQILESIFDQGNGTPNKEKIKEIAADLVQHGQVSETNVYNWFQNRRARSKRKLQNVAPSTTESEADTEVDSKDRKTKPEEFYSQQNNVTTEVDLQCLNDSGSNNKPYSMFPSDGSLSSTRKLSHVPVFDGVLSNSRSDYQTGKMGEDESYNLYKQAGDYNMEGRYLG* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0106 270 CDD homeodomain 94 155 IPR001356 GO:0003677
Lja5g0106 270 Pfam Homeodomain 94 154 IPR001356 GO:0003677
Lja5g0106 270 ProSiteProfiles 'Homeobox' domain profile. 90 155 IPR001356 GO:0003677
Lja5g0106 270 PANTHER - 4 265 - -
Lja5g0106 270 MobiDBLite consensus disorder prediction 153 181 - -
Lja5g0106 270 SUPERFAMILY Homeodomain-like 87 156 IPR009057 -
Lja5g0106 270 PANTHER WUSCHEL-RELATED HOMEOBOX 13 4 265 IPR044559 GO:0003700
Lja5g0106 270 SMART HOX_1 92 159 IPR001356 GO:0003677
Lja5g0106 270 Gene3D - 96 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0106 Lja-Chr5 955478 958119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0106 4 266 Wox Gene Family AT4G35550 48.057 5.15e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Lja5g0106 Homeodomain 3.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0106 - - pvu:PHAVU_007G011600g 358.992