Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0103 ATGATGAAGAGAGAATTCAGAGAAATTGATCATAGCATAACCATGGCAAACTACTTGATGTTGCTTTCTCAGCAGGGAGGTCCATATGAAACAACAACAACCTATGTGAACTCTTCCAACAACAACAACAACCGTGTCTTTGAGTGCAAGACATGCAACCGGAAGTTCCAGTCTTTTCAGGCGCTCGGTGGCCACCGTGCGAGCCACAAGAAGCCGAGGTTGGAAGATGGAGGTGAGAGTAATGATCATGGTTCATCACCACCAAAGGCTAAAACTCATGAGTGCTCCATTTGTGGATTGGAGTTTTCAATAGGGCAAGCTTTGGGTGGACACATGAGGCGTCACAAAACACCTTCAAATAAAGGATCCGCGACTACTAGTAGCAGTGGTGGTAGCGGTAGTGGTACTATTGATACTTCAGCAAACAGGGAGAAGGAAAACAGGAGGGTTTTGTTTCCAGATTTAAATTTGACTCCTATAGAGAATGGTCTTGTGTTTTTGAAGATTGGACAAGCAACTCCTCTAGTTGATTGTTTCAATTGA 543 0.4383 MMKREFREIDHSITMANYLMLLSQQGGPYETTTTYVNSSNNNNNRVFECKTCNRKFQSFQALGGHRASHKKPRLEDGGESNDHGSSPPKAKTHECSICGLEFSIGQALGGHMRRHKTPSNKGSATTSSSGGSGSGTIDTSANREKENRRVLFPDLNLTPIENGLVFLKIGQATPLVDCFN* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0103 180 MobiDBLite consensus disorder prediction 68 89 - -
Lja5g0103 180 Pfam C2H2-type zinc finger 93 117 - -
Lja5g0103 180 Pfam C2H2-type zinc finger 46 72 - -
Lja5g0103 180 PANTHER ZINC FINGER PROTEIN ZAT12 14 176 - -
Lja5g0103 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 47 74 IPR013087 -
Lja5g0103 180 SUPERFAMILY beta-beta-alpha zinc fingers 45 115 IPR036236 -
Lja5g0103 180 MobiDBLite consensus disorder prediction 110 145 - -
Lja5g0103 180 PANTHER ZINC FINGER PROTEIN ZAT5 14 176 - -
Lja5g0103 180 Gene3D Classic Zinc Finger 83 148 - -
Lja5g0103 180 Gene3D Classic Zinc Finger 27 82 - -
Lja5g0103 180 MobiDBLite consensus disorder prediction 119 140 - -
Lja5g0103 180 MobiDBLite consensus disorder prediction 62 92 - -
Lja5g0103 180 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lja5g0103 180 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lja5g0103 180 ProSitePatterns Zinc finger C2H2 type domain signature. 49 69 IPR013087 -
Lja5g0103 180 SMART c2h2final6 47 69 IPR013087 -
Lja5g0103 180 SMART c2h2final6 93 115 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0103 Lja-Chr5 937625 938480 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0103 2 177 C2H2 Transcription Factor Family AT3G53600 41.341 1.14e-34 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0103 zf-C2H2_6 1.6e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0103 - - gmx:100816598 191.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0103 5 937625 938480 Lja1g2590 1 30302774 30303633 ECH
Lja5g0103 5 937625 938480 Lja5g0103 5 937625 938480 ECH