Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0095 ATGAGGAAAACCACTCACCCCGATTTCAACCGTCAACCACCGCACTTCCGGTGGAAGCCCGGATTCCACCGCCTCGACCGTCCTCCGGAGCGTCTCCGCGCTCCCAATTTCGTCGTCGATCTCTGCTTCCTGCGCCTCCGCCACGGCCTCCGCCGTGACGACGTCGACTCTCTCATCACCCGCTGCATTCCCAGGCCGGAGAATTTCACCTTCTACCCCTGCGACCGTGTCGCTGCCTCCCTCAATTTCCAGCAGTGGACGGACGCACGTGACGCCGTCGTCTGCCTATGGGAGTCGCGCCTCTCTGGCGCCCATGATTTCACGCCGGAACTCTCCTCCAATGTCCTACTACCCTCCGACAGGGTCGAGCTCGAAGCTCGCCTCCGATCCCTCTTCGCCAGCCACGTGAGGGGGTTGATGGATGGCAAGGAGGTGAAGCGATGGGTGGAGGAGAGGGACAAGTTGTCCAAAGAGATTGCTCACGTCGCAAAGTCGCTGCGTACCCCGTTGCCAATTGGCGTGCTCGAACAGCAGCGACACAAGAGGAATGGGCTTGAGGTTGAGAAGGATTTGGTTGAAAGGAGAATTAAGGAGTTCCAGTGCGCAATGCGGTGCATATTGCAGTATCTGGAGGAGGAGGAGGAAGGTGAAGAAGATTTTGTCCCTATATTCAGGTTTGATGGAAGTAGTTTGGACTGGAAGCACATTCAAAGCCTCATCATCAGGGAACGTCGCAGGCTCGAAGAAGGATTGCCCATTTATGCATACCGGAGGGATATTCTTCGCGAAATACATCATCAACAGATAATGGTATTGATTGGAGAGACCGGTTCGGGCAAGAGTACACAGTTGGTGCAGTTTCTTGCTGATTCGGGCATTGGTGCTGATGAGTGCATTGTGTGCACCCAGCCTCGCAAGATTGCTGCCAAATCATTGACCCAAAGGGTCCAGGAAGAAAGCAGCGGGTGTTATGGTGGTGACAACGCAATCAAGTGTTATTCCATGTTTTCATCCTCGCACGAGTTTGATTCCAAGATAACATTCATGACAGATCACTGTTTATTGCAGCACTACATGAGTGATAAGAATTTGTTTGGGGTCTCGTGTATCGTAATTGATGAGGCTCATGAAAGGAGCTTAAATACTGATCTACTGTTGTCGCTAATAAAGAATTTACTTTGTAGGAGGGTTGAAATGCGGCTTATCATTATGTCTGCTACAGCTGATGCCAAGCAGCTATCTGATTACTTTTATGGTTGTGGAATTTTTGGTGTCCGTGGGAGAAAATTTCCTGTGGAGGTGAGATATGCTCCTTCTGATGCAGGGTATTCTTCTTCTGCTGTTGTGGCCTCATATGTTTACGATGTCGTCAGAATGGCAACTGAGATTCACAAAAGAGAGAAAGAGGGAACTATTCTTGCCTTTTTGACCTCACAGGCAGAAGTGGAATGGGCCTGTGAAAAATTTACAGCTCTCTCTGCTGTTGCTTTGCCCTTACATGGGAAACTTTCATCTGAGGAGCAATTTCATGTTTTCCAGAGCTTCCCTGGAAAAAGAAAAGTGATATTTTCAACAAATCTTGCAGAGACGTCCCTTACAATTCCTGGTGTTAAGTATGTAATAGATTCTGGGTTGGTAAAAGACAGTCGATTCGATCCTAACAGTGGCATGAATGTACTTAAGGTTAGCTGGATCACCAAGAGCTCTGCTGATCAGCGGGCTGGTCGTGCTGGGAGGACTGAGCCTGGTAAGTGTTATAGGCTGTATTCAGAAGCTGACTATCAGTCTATGGAACTAAATCAAGAACCGGAGATTCGAAGAGTTCATCTCGGTGTAGCAGTTTTGAGAATCCTTGCTTTAGGAGTTAATAATGTGCAGGATTTTGATTTTGTGGATGCTCCAAGTCCTAGTTCTATTGAGATGGCGATCAGGAATCTAATTCAATTAGGAGTGATTAAACTGAACAATAATTTTCATGAATTAACTGATGAAGGTAGATGCTTGGTAAAAATGGGGATCGAACCAAGACTTGGTAAACTTATTCTTGGCTGTTCCGGACATTGTTTGCGTAGAGAAGGCATTGCCCTTGCTGCTATGATGACCAATGCCAGTAGCATATTTTGCAGAGTTGGTAATGAAGGTGATAAACAGAGATCTGATTGCCACAAAGTGCAATTTTGCCATCGTGATGGTGACCTCTTTACTCTTCTGTCTGTGTACATGGAATGGGAAGCTTTGCCTACAGAGAGGAAGAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCTATGAGGAGATGCCATGACACATATTTGGAGTTAGTATCTTGTCTTGAGCGTGAACTTAGCTTTTTCACTCCATCTTACTGGCGATGGGACCCTTATAAACCCTCTTTTCATGATACGAATATGAAAAAGGTTATACTCTCCTCACTTGCTGAGAATGTGGCCACGTACTCTGGATGCAATCAACTTGGTTATGAAGTCGCACAAACGGGGAGATGTGTCCAACTACATCCGTCTTGTTCCTTGCTTGTATTTGCTGAGAGACCTGGTTGGGTGGTTTTTGGCGAGCTTCTTTCAGTTTCTAATGAATATTTGGTCTGTGTAAGTGCTTTTGACTTTCAATCGTTGCATGACCTTTGCCCTCGTCCCTTGTTTGATGTATCCAAGATGGAAGAACGGAAGTTGCAAATGAAGACATTGACTGGTTTTGGCACTATTCTTCTCAGGAGATTTTGTGGGAAAGCCAACAGTAATTTGCTTGGTCTTGTTTCACGGATAAGGAAAGCTTGTATGGATGAACGTATCTTCATTCAAGTGAATGTTGACCAGCATGATGCCCAGTTATATGCCACTTCACATGATATGAATACAGCCCTTAGGTTGGTTGATGATGTTTTAGAATGTGAGAAAAAGTGGCTACGTGCTGAATGTATGGAAAAATGCTTGTATCATGGGTCTGGTTTCTCACCACCTGTAGCTTTATTCGGGTCTGGTGCTGAGATAAAGCATTTGGAACTTGACAAACGTTCCTTGAGTGTTGACGTGTATCACCCAAACGTAAGTGCAATTGACGACAAAGAGCTCTTGATGTTTTTTGAGAAGAATACCTCATGTTGTATCTGTTCTGTGCACAAGTTCACAGGCATGGCAAAGGATGTTGAGGATGGCGAAAAGTGGGGCAGGATAACATTTCTGTCCCCTGATGCTGCCAAAAGAGCTGCTGAGTTGGATGGAGAGGAGTTCTCTGGCTCGTCCTTGAAAATTGTTACTTCACAATCTGCTACTGGAGGGAGTAAACCATTTTCATTTCCTGCCGTAAAAGCAAAAATTTACTGGCCTCGTAGGCTTAGCAAAGGAGTTGCCATAGTTAAATGTGATATACAGGATGTCAGATTCATCATTACAGAGTTTTATAACCTTGCTATTGGAGGAAGGTATGTTCGATGTCAAATTAGCAACAAGTATGCGGACAGTGTTGTGATAAGTGGGTTTGCCAAAGAGCTTTCAGAAGGTGAAGTTTTTGATGTAATAAGAACTGCTACAAGTAGAAGGATTTTGGATTTTTTCTTGGTGAGAGGAGAGGCAGTTGGAAATCCACCATGCAGTGCTTGTGAAGAGGCACTTCTTAAAGCAATTTCCCCCTTAATGCCCAAAAGGAACCCCCACATTGGCTCTTGTCGAGTTCAGGTGTTTCCACCTGAGCAGAAGGATGCTTTCATGAGAGCTTTAATCACTTTCGATGGAAGATTACATTTAGAGGCCGCAAAAGCTTTGGAGACAATTGAAGGAACGGTGTTGCCCGGATTTCTTTCATGGCAGAAGATAAACTGCCAGCAGTTGTTCAATAGCTCCTTGACATTTCCTCATCCAGTGTATCGCGTGATTAAGGAACAACTGGACAAAGTACTTGCAAGCTTCAACAATCTAAAGGGTCTTGAGTGGAACCTAGACAAGATTGCTAATGGTTGCCACCGAGTGAGGATAACAGCCAATGCCACAAAGACAGTTGCAGAAGTTAGGAGACCTCTGGAAGAACTTTCCAGAGGGAAAACAATAGAGCACAACAGCCTCAACCCTGCAGTTCTAGAGCTCATGTGTTCCAGAGACGGCTTCAGTCTTAGAAGCTCAATACAACAAGAGACAGGAACTTACATTCTTTTTGACAGGCACAACCAGAATTTACGGATTTTTGGTTCTCCGGATAAGATTGATTGGGCTCAGCAGAAGCTGATTCAATCCCTACTCTCTCTCCACGAAGGAAGGCAGTTGGTAATCCATCTGAGAGGGAGGGATCTACCTCCGGACTTAATGAAGCAAGTGGTTAAGAATTTTGGGCCAGATCTCCATGGACTAAAGCAGAAGGTACCTGGGGTAGATCTTAACCTCAACACTCGCAGCCAACAAATATTTCTTCATGGTAACAAGGAGTTGAAACCAAGAGTAGAGGAAGCAATTCTTGAGATTGCACGTTCAAGTAATGATTTGGTTAAGAGACATGACACCGGACCTAGCTGCCCAATTTGCTTATGTGAAGTTGAGGATGGATACCAACTTGAAGGCTGTGGTCATTTGTTCTGCCGTTTGTGTCTTGTGGAGCAATGTGAATCAGCTATAAAAAACCAAGGAATTTTCCCAATATGTTGTTCTCAGGAGGGCTGTGGAGATCCTATTCTGCTTACAGATTTGAGATCTTTCTTATTAAATGATAAGCTGGAGGAACTTTTCAGGGCTTCTTTGGGTGCTTTTGTGGTCGCGAGTGGGGGAACTTACCGGTTCTGCCCCTCTCCTGACTGCCCCTCAATTTATCGAGTTGCGGATCCGGACACCGGTGGTGAGCCCTTTGTTTGTGGGGCGTGTTATTCAGAGACTTGTACCAGGTGCCATGTAGAGTATCATCCATACCTTTCATGCGAGAGATATAAAGAATTCAAGGAAGATCCGGACTTATCTCTGAAGGAGTGGTGCAAAGGGAAAGAACAAGTTAAGAGCTGTTCGGCCTGTGGGTATGTAATTGAGAAGGTAGATGGCTGCAATCACGTTGAGTGCAAGTGTGGAAAGCATGTCTGCTGGGTTTGCTTGGAGATCTTTTTGAGCAGTGATGAATGTTATAACCATTTAAGAACTATACACTTGGCCATCATCTAG 5154 0.4523 MRKTTHPDFNRQPPHFRWKPGFHRLDRPPERLRAPNFVVDLCFLRLRHGLRRDDVDSLITRCIPRPENFTFYPCDRVAASLNFQQWTDARDAVVCLWESRLSGAHDFTPELSSNVLLPSDRVELEARLRSLFASHVRGLMDGKEVKRWVEERDKLSKEIAHVAKSLRTPLPIGVLEQQRHKRNGLEVEKDLVERRIKEFQCAMRCILQYLEEEEEGEEDFVPIFRFDGSSLDWKHIQSLIIRERRRLEEGLPIYAYRRDILREIHHQQIMVLIGETGSGKSTQLVQFLADSGIGADECIVCTQPRKIAAKSLTQRVQEESSGCYGGDNAIKCYSMFSSSHEFDSKITFMTDHCLLQHYMSDKNLFGVSCIVIDEAHERSLNTDLLLSLIKNLLCRRVEMRLIIMSATADAKQLSDYFYGCGIFGVRGRKFPVEVRYAPSDAGYSSSAVVASYVYDVVRMATEIHKREKEGTILAFLTSQAEVEWACEKFTALSAVALPLHGKLSSEEQFHVFQSFPGKRKVIFSTNLAETSLTIPGVKYVIDSGLVKDSRFDPNSGMNVLKVSWITKSSADQRAGRAGRTEPGKCYRLYSEADYQSMELNQEPEIRRVHLGVAVLRILALGVNNVQDFDFVDAPSPSSIEMAIRNLIQLGVIKLNNNFHELTDEGRCLVKMGIEPRLGKLILGCSGHCLRREGIALAAMMTNASSIFCRVGNEGDKQRSDCHKVQFCHRDGDLFTLLSVYMEWEALPTERKNKWCWENSINAKSMRRCHDTYLELVSCLERELSFFTPSYWRWDPYKPSFHDTNMKKVILSSLAENVATYSGCNQLGYEVAQTGRCVQLHPSCSLLVFAERPGWVVFGELLSVSNEYLVCVSAFDFQSLHDLCPRPLFDVSKMEERKLQMKTLTGFGTILLRRFCGKANSNLLGLVSRIRKACMDERIFIQVNVDQHDAQLYATSHDMNTALRLVDDVLECEKKWLRAECMEKCLYHGSGFSPPVALFGSGAEIKHLELDKRSLSVDVYHPNVSAIDDKELLMFFEKNTSCCICSVHKFTGMAKDVEDGEKWGRITFLSPDAAKRAAELDGEEFSGSSLKIVTSQSATGGSKPFSFPAVKAKIYWPRRLSKGVAIVKCDIQDVRFIITEFYNLAIGGRYVRCQISNKYADSVVISGFAKELSEGEVFDVIRTATSRRILDFFLVRGEAVGNPPCSACEEALLKAISPLMPKRNPHIGSCRVQVFPPEQKDAFMRALITFDGRLHLEAAKALETIEGTVLPGFLSWQKINCQQLFNSSLTFPHPVYRVIKEQLDKVLASFNNLKGLEWNLDKIANGCHRVRITANATKTVAEVRRPLEELSRGKTIEHNSLNPAVLELMCSRDGFSLRSSIQQETGTYILFDRHNQNLRIFGSPDKIDWAQQKLIQSLLSLHEGRQLVIHLRGRDLPPDLMKQVVKNFGPDLHGLKQKVPGVDLNLNTRSQQIFLHGNKELKPRVEEAILEIARSSNDLVKRHDTGPSCPICLCEVEDGYQLEGCGHLFCRLCLVEQCESAIKNQGIFPICCSQEGCGDPILLTDLRSFLLNDKLEELFRASLGAFVVASGGTYRFCPSPDCPSIYRVADPDTGGEPFVCGACYSETCTRCHVEYHPYLSCERYKEFKEDPDLSLKEWCKGKEQVKSCSACGYVIEKVDGCNHVECKCGKHVCWVCLEIFLSSDECYNHLRTIHLAII* 1718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0095 1717 SUPERFAMILY RING/U-box 1507 1571 - -
Lja5g0095 1717 SMART ibrneu5 1641 1705 IPR002867 -
Lja5g0095 1717 SMART ibrneu5 1576 1640 IPR002867 -
Lja5g0095 1717 Gene3D - 429 600 IPR027417 -
Lja5g0095 1717 Pfam Helicase associated domain (HA2) 642 736 IPR007502 GO:0004386
Lja5g0095 1717 SUPERFAMILY RING/U-box 1587 1646 - -
Lja5g0095 1717 Gene3D - 1638 1714 - -
Lja5g0095 1717 CDD DEXHc_RHA-like 268 425 - -
Lja5g0095 1717 Pfam DEAD/DEAH box helicase 259 413 IPR011545 GO:0003676|GO:0005524
Lja5g0095 1717 Pfam Helicase conserved C-terminal domain 462 580 IPR001650 -
Lja5g0095 1717 ProSitePatterns Zinc finger RING-type signature. 1524 1533 IPR017907 -
Lja5g0095 1717 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 261 426 IPR014001 -
Lja5g0095 1717 Pfam IBR domain, a half RING-finger domain 1587 1640 IPR002867 -
Lja5g0095 1717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1504 1583 IPR013083 -
Lja5g0095 1717 PANTHER ATP-DEPENDENT RNA HELICASE 1544 1633 - -
Lja5g0095 1717 PANTHER ATP-DEPENDENT RNA HELICASE 77 1469 - -
Lja5g0095 1717 CDD SF2_C_RHA 430 589 - -
Lja5g0095 1717 SMART ultradead3 249 435 IPR014001 -
Lja5g0095 1717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 792 IPR027417 -
Lja5g0095 1717 SUPERFAMILY RING/U-box 1662 1710 - -
Lja5g0095 1717 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 455 621 IPR001650 -
Lja5g0095 1717 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 1544 1633 - -
Lja5g0095 1717 PANTHER ATP-DEPENDENT RNA HELICASE DEAH11, CHLOROPLASTIC-RELATED 77 1469 - -
Lja5g0095 1717 ProSiteProfiles TRIAD supradomain profile. 1504 1712 IPR044066 -
Lja5g0095 1717 SMART helicmild6 483 581 IPR001650 -
Lja5g0095 1717 Coils Coil 175 202 - -
Lja5g0095 1717 Gene3D - 603 646 IPR042035 -
Lja5g0095 1717 Gene3D - 234 428 IPR027417 -
Lja5g0095 1717 ProSitePatterns Zinc finger C2H2 type domain signature. 1692 1713 IPR013087 -
Lja5g0095 1717 ProSiteProfiles Zinc finger RING-type profile. 1508 1550 IPR001841 -
Lja5g0095 1717 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 806 884 IPR011709 -
Lja5g0095 1717 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 368 377 IPR002464 -
Lja5g0095 1717 SMART ha2_5 641 737 IPR007502 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0095 Lja-Chr5 886754 892729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0095 1523 1699 C3H Transcription Factor Family AT2G31770 25.946 5.20e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0095 K12818 - gmx:100810008 2639.37