Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0092 ATGACGTTCTTTCAAAACAATTTTAGATGTAAGAGGGAAGGTGGTCTTCCTACATCGGATGCACCAGCAACAACAAGGATATTTTCTTGCAAGTTTTGTGACAAAACATTCCGTAGCGGCCAAGCACTGGGTGGACATCAGAATGCCCACAAGAAAGAACGTGCGGCACTGAAGAGAGAAGAGATTTTCAGCACCCTCAATTTAGGTCCATTTCCTCCATCACCATTGTTATTCAAATCCATCAGATCAACCGAACCGAAGATCAAAAAGGAGCTTGATCTGCTAGGTAACTTTTCATCTGATGATGAAAAATTTAGTCGAAAAAGTCATTGTGATGTAGAATTCATTGATTTGACTTTGACACTTTGA 369 0.4011 MTFFQNNFRCKREGGLPTSDAPATTRIFSCKFCDKTFRSGQALGGHQNAHKKERAALKREEIFSTLNLGPFPPSPLLFKSIRSTEPKIKKELDLLGNFSSDDEKFSRKSHCDVEFIDLTLTL* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0092 122 Pfam C2H2-type zinc finger 28 53 - -
Lja5g0092 122 Gene3D Classic Zinc Finger 8 67 - -
Lja5g0092 122 SUPERFAMILY beta-beta-alpha zinc fingers 25 55 IPR036236 -
Lja5g0092 122 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Lja5g0092 122 PANTHER OS02G0182300 PROTEIN 22 60 - -
Lja5g0092 122 PANTHER ZINC FINGER PROTEIN JAGGED 22 60 IPR045320 GO:0003700
Lja5g0092 122 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0092 Lja-Chr5 872806 873174 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0092 22 59 C2H2 Transcription Factor Family AT5G14010 60.526 8.30e-13 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja5g0092 zf-C2H2_6 2.7e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0092 - - gra:105775854 70.4774