Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0074 ATGGCGTCGATGCTGCCATACGGCGATGTAGATTCCACTTTGAGGGCCTTGGCCGGTCAAGCAGAGGGTTTCGGCCGCAACGCTATCGGTGGTCTCCATGGTCCTCTCTATTTGGTCACCACCCTTGCAGATGATGGTCCTGGTTCCCTTCGTGAGGGATGTCGAAGAAAGGAGCCCCTGTGGATTGTTTTTCAAGTTTCGGGCACGATTCATCTTCAGTCATACTTGAGTGTGTCATCTTATAAGACTGTAGATGGCAGAGGCCAGAGGATAAAATTTACTGGGAAGGGATTAAGGCTGAAAGAATGTGAGCACATAATTGTATGCAATCTTGAGTTTGAGGGTGGTAGGGGTCATGATGTGGATGGCATTCAAATCAAACCTAATTCTAGGCACATATGGATTGATCGATGCAGCCTTCGTGATTATGATGATGGGCTTATAGACATTACAAGACAGAGCACAGATATCACTATATCTAGATGTCACTTTGCATCACATGACAAGACCATGCTAATTGGAGCTGATCCATCTCACGTTGGCGATCGATGCATCCGGGTGACCATTCATCATTGTTTCTTTGACGGAACCCGGCAAAGACACCCTCGTGTGAGATTTGGAAAAGTTCATCTGTACAACAATTACACCAGAAACTGGGGAATATATGCTGTTTGTGCTAGTGTTGAGTCCCAGATATACTCTCAATGCAACATATATGAAGCTGGAACTAAGAAAAAGACTTTTGAGTTTTATACTGAAAAGGCGGCAGATAAGGAAGAGCAGAAGACTGGCTTCTTAATATCTGAAGGAGACATGTTTCTGAATGGTGCTCAGCCATGCTTACCTACAGAGTACAAAGAAGAATCCATGTTCCATCCTAGTGAGTATTACCCAACATGGACTATGGAAGCAGCTGATAATTCTCTCAGAGATATCCTCCAGTTATGTACAGGTTGGCAGTCCATTTGTAGGCCAGAAGACCATACGACCATCTAA 996 0.4458 MASMLPYGDVDSTLRALAGQAEGFGRNAIGGLHGPLYLVTTLADDGPGSLREGCRRKEPLWIVFQVSGTIHLQSYLSVSSYKTVDGRGQRIKFTGKGLRLKECEHIIVCNLEFEGGRGHDVDGIQIKPNSRHIWIDRCSLRDYDDGLIDITRQSTDITISRCHFASHDKTMLIGADPSHVGDRCIRVTIHHCFFDGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIYSQCNIYEAGTKKKTFEFYTEKAADKEEQKTGFLISEGDMFLNGAQPCLPTEYKEESMFHPSEYYPTWTMEAADNSLRDILQLCTGWQSICRPEDHTTI* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0074 331 Pfam Pectate lyase 74 238 IPR002022 -
Lja5g0074 331 PANTHER PECTATE LYASE 3 326 - -
Lja5g0074 331 PRINTS Pollen allergen Amb family signature 200 219 IPR018082 -
Lja5g0074 331 PRINTS Pollen allergen Amb family signature 222 241 IPR018082 -
Lja5g0074 331 PRINTS Pollen allergen Amb family signature 20 37 IPR018082 -
Lja5g0074 331 PANTHER PECTATE LYASE 18-RELATED 3 326 IPR045032 GO:0030570
Lja5g0074 331 Gene3D - 7 313 IPR012334 -
Lja5g0074 331 SMART amb_all 32 245 IPR002022 -
Lja5g0074 331 SUPERFAMILY Pectin lyase-like 18 301 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0074 Lja-Chr5 756867 759666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0074 42 328 Polysaccharide Lyase AT3G55140 81.882 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0074 K01728 - gmx:100802068 618.231