Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0071 ATGATCTCAGACACAGAACCTGAAGAACACGCCAACGCGGCCACCGTTGCCGCCGTCGCCGGAAAATCCTCTGCCGGTTTTTCCTTTGATGATCATCTCGCACCGCCGGCAGCTCCAAACATTGTCATGTCCTCCAAGGATCACGATTCTCTCTTCAGTGGTGGCGGTATCAGCCTTCTGTCTGGAAGTCGAAATGGAAGGTTCAGCTATGGATATTCCAGTTTCAAGGGTAAAAGATCTTCAATGGAGGATTTTTTTGAGACCAGAATATCAGAAGTTGATGGTCAGATGGTTGCCTTTTTCGGTGTTTTTGACGGTCACGGAGGTTCTCGGACTGCAGAATACCTGAAAAACAATTTGTTTAAGAATTTGAGTAGCCATCCCGATTTTATCAAAGACACCAAGACCGCAATTGTTGAAGCATTTAAACAGACAGATGTTGATTACCTCAATGAGGAAAAAGGACATCAAAGGGATGCTGGGTCCACTGCATCAACAGCTGTATTGTTGGGTGACCGCATTCTTGTTGCAAATGTTGGCGATTCCCGAGTAGTTGCGAGTAGAGCTGGTTCAGCTGTTCCTTTGTCCGTTGATCACAAACCTGATAGATCTGATGAGCGTCAAAGGATTGAGCAGGCTGGGGGATTCATAATTTGGGCAGGAACCTGGAGGGTTGGTGGTGTTCTTGCTGTTTCTCGTGCATTTGGAGATAAACTTCTTAAGCCATATGTTGTTGCTGACCCAGAAATTCAGGAGGAAGAGATTGATGGTGTAGATTTTATAATAATAGCTAGTGATGGTCTTTGGAATGTCATATCAAACAAGGAAGCGGTGTCTTTGGTACAAAATATCACAGATGCGGAAGTGGCATCCAGAGAACTAATTAAAGAAGCATATTCACGAGGAAGCTCAGACAACATCACTTGTGTTGTTGTTCGATTCGATCTATCCTGA 954 0.4465 MISDTEPEEHANAATVAAVAGKSSAGFSFDDHLAPPAAPNIVMSSKDHDSLFSGGGISLLSGSRNGRFSYGYSSFKGKRSSMEDFFETRISEVDGQMVAFFGVFDGHGGSRTAEYLKNNLFKNLSSHPDFIKDTKTAIVEAFKQTDVDYLNEEKGHQRDAGSTASTAVLLGDRILVANVGDSRVVASRAGSAVPLSVDHKPDRSDERQRIEQAGGFIIWAGTWRVGGVLAVSRAFGDKLLKPYVVADPEIQEEEIDGVDFIIIASDGLWNVISNKEAVSLVQNITDAEVASRELIKEAYSRGSSDNITCVVVRFDLS* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0071 317 ProSitePatterns PPM-type phosphatase domain signature. 100 108 IPR000222 GO:0043169
Lja5g0071 317 PANTHER ALPHABET, ISOFORM E-RELATED 35 317 - -
Lja5g0071 317 SUPERFAMILY PP2C-like 62 315 IPR036457 -
Lja5g0071 317 SMART PP2C_4 59 312 IPR001932 -
Lja5g0071 317 Gene3D - 62 316 IPR036457 -
Lja5g0071 317 ProSiteProfiles PPM-type phosphatase domain profile. 69 314 IPR001932 -
Lja5g0071 317 CDD PP2Cc 68 314 IPR001932 -
Lja5g0071 317 PANTHER PROTEIN PHOSPHATASE 2C 11-RELATED 35 317 - -
Lja5g0071 317 Pfam Protein phosphatase 2C 70 307 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0071 Lja-Chr5 728515 732751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0071 41 317 PP2C-type Phosphatase Gene Family AT1G43900 74.368 1.37e-157 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0071 K17506 - gmx:100776867 538.88