Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0048 ATGGCATCAACATCTTGTATCAGTACGAGTCCATTACCCATGAATGAGGGAGCTCCGAGCTATATTGCATATCCTCCTCCTCTAACAGAATATAAGAATGTTGTTGACGATGCCACGCTCTTCTTGTCTACCTTGGAGAAGCTCCACGCTGATCTGGGTACCAGGTTGATGATTCCAGTTATTGGGGGAAGAGATGTAGATTTGCATCGCCTCTTTGTTGAAGTCACTTCTCGCGGAGGGTTAGCAAAAATGATTAAAGAGAGAAGATGGAAAGAAGTAACCTCAGTTTTCAATTTTCCATCAACAGCTACAAATGCATCTTTTGTGTTGCGGAAGTATTATACTTCATTGCTCTACCATTACGAACAAATTTACTATTTTAGAGCCCGGGAATGGGACCCTGCTGCTGCTGAAGCTTTGCAGGGTCCATCAACCCCAGTTCCTTTTCCAAAGATTCAGAAATTGCAGCCTTCATCAGAAATTCAACCAGCTGTCTTTCAACAGTCAAATGTTAATGCTGCTAAACTCCCTGAAGCATCTTCGGCAGGGCATCCAGTCATTGGGGTCATTGATGGGAAATTTGACAGTGGGTATCTAGTAACTGTCACAATTGGATCTGAGAAACTCAAAGGTGTGCTATATCAAGCTTCACAGAACCCTGCATTGCCAGCATCTCATCAGAGTGCTTCGGCTCATGACAACAATGCATCTGCTTCATTGGGTGTCCATCGTCGCCGACGCAGGAAGTCATCAGAGATAAGAAAGAGAGATCCTGCTCTTCCAAAACCGAACAGAAGTGGATACAATTTCTTCTTTGCTGAACAACATGCAAGACTAAAGCCACTTCACCAAGGGAAGGACAGAGAGATGAGTAGGACAATTGGTGACCTCTGGAACAAGTTACAAGAATCAGAAAAGACAGTTTATCAAGAGAAGGCTATGAAGGATAAAGAGAGGTACCATGCTGAAATGGAGGATTATCATGAGAAACTGAAGATGGACCTAGTTATCAGTGACGCCGTGCCACTTCGACAACGATTTCCTGAACCGGATACAGACATGTTGGATGCTGACGCGAAATTGGATGATGCTCAGGCAGATTCTCTTCAAACTGTGGAGGAGAGCAGTTTTGGTGAAAGTGACTATGAAGTTGATAAAGCTGGGGAGAGAGATTTCAATGTGGATTCATGA 1191 0.4383 MASTSCISTSPLPMNEGAPSYIAYPPPLTEYKNVVDDATLFLSTLEKLHADLGTRLMIPVIGGRDVDLHRLFVEVTSRGGLAKMIKERRWKEVTSVFNFPSTATNASFVLRKYYTSLLYHYEQIYYFRAREWDPAAAEALQGPSTPVPFPKIQKLQPSSEIQPAVFQQSNVNAAKLPEASSAGHPVIGVIDGKFDSGYLVTVTIGSEKLKGVLYQASQNPALPASHQSASAHDNNASASLGVHRRRRRKSSEIRKRDPALPKPNRSGYNFFFAEQHARLKPLHQGKDREMSRTIGDLWNKLQESEKTVYQEKAMKDKERYHAEMEDYHEKLKMDLVISDAVPLRQRFPEPDTDMLDADAKLDDAQADSLQTVEESSFGESDYEVDKAGERDFNVDS* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0048 396 SMART bright_3 36 127 IPR001606 GO:0003677
Lja5g0048 396 MobiDBLite consensus disorder prediction 223 267 - -
Lja5g0048 396 SMART hmgende2 260 329 IPR009071 -
Lja5g0048 396 SMART ARID_2 32 122 - -
Lja5g0048 396 MobiDBLite consensus disorder prediction 223 237 - -
Lja5g0048 396 MobiDBLite consensus disorder prediction 379 396 - -
Lja5g0048 396 Coils Coil 310 330 - -
Lja5g0048 396 Pfam ARID/BRIGHT DNA binding domain 40 122 IPR001606 GO:0003677
Lja5g0048 396 Gene3D - 27 139 IPR036431 GO:0003677
Lja5g0048 396 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 261 328 IPR009071 -
Lja5g0048 396 PANTHER HIGH MOBILITY GROUP B PROTEIN 15 3 386 - -
Lja5g0048 396 SUPERFAMILY ARID-like 37 132 IPR036431 GO:0003677
Lja5g0048 396 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677
Lja5g0048 396 CDD HMGB-UBF_HMG-box 261 325 - -
Lja5g0048 396 Gene3D High mobility group box domain 245 337 IPR036910 -
Lja5g0048 396 SUPERFAMILY HMG-box 249 332 IPR036910 -
Lja5g0048 396 Pfam HMG (high mobility group) box 261 327 IPR009071 -
Lja5g0048 396 MobiDBLite consensus disorder prediction 366 396 - -
Lja5g0048 396 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677
Lja5g0048 396 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 3 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0048 Lja-Chr5 525060 530060 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0048 1 358 ARID Transcription Factor Family AT1G04880 53.495 5.33e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lja5g0048 ARID 9.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0048 - - gmx:100783284 560.066