Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0047 ATGCCGGAGCTTCGTAGTGGACCACGACGTGGCCGAGCTGCGGCGGTGGGTCGGAAAGGTCCGCAACCGGCGAACAAGAACGTTGACGTGAAAACTCGAGCTGCCCCGGTAAAGGGGAGGCCTAGGACTAGATTGGCGGCCAAGGAATTACAGGTACAAGAGCCTCCGATTGTGATTATATCGGTTGCAGAGGAGAATAAGATCAAAGAAGAAGGCGGTGCAGGCGTGATGGGTGGTCATGAAAGTGGTGGTTTGAGTCCCAATAAGGTTGTTGTCCCTGAGGATGAAGGGAACACTCCACCTATACCAGACAAGGTTCAAGTAGGAGGATCACCTCTTTACAAGGTAGATAGGAAATTGGGCAAAGGAGGATTTGGTCAGGTTTATGTTGGCCGTCGCGAGCGTGCTAATGGCCCTGGACCTTTGGAGGTTGCTCTGAAGTTTGAACACAGAAACAGTAAAGGCTGTAACTATGGACCTCCTTACGAGTGGCAAGTATACAACACCCTTGGTGGTAGTCATGGTATACCTAAAGTACATTATAAAGGACGACAAGGAGAATTTTACATAATGGTTATGGACATACTCGGTCCAAGTTTGTGGGATGTCTGGAATAACTCAAACCAGACGATGTCTGCTGAAATGGTCTCATGTATAGCTGTTGAGTCCTTATCAATACTTGAGAAGATGCACACAAAAGGTTATGTACATGGAGATGTAAAACCAGAGAACTTTTTACTGGGTCAGCCAGCTACAGTACAAGAGAAGAAACTGTTTCTTGTTGACCTTGGATTGGCAACAAAGTGGAAAGATTCATCCAACGGTCAGCATGTTGAATATGATCAGCGCCCTGATATGTTTAGAGGGACTGTTCGATATGCCAGCGTTCATGCTCATTTGGGAAGAACTGCTAGTAGAAGGGATGATCTTGAATCTCTAGCATACACACTAGTCTTCCTTCATAAAGGGCGATTACCATGGCAAGGATATCAGGGTGACAGCAAATCCTTCCTTGTTTGCAAAAAGAAAATGGGAGTTTCTCCTGAGATGCTGTGCTGCTTTTGCCCTGCTCCTTTTAGGCAGTTTCTTGAGATTGTAGTAAACATGAGGTTTGATGAAGAACCTAATTATTCCAACCTAATATCCTTGTTTGATGGTGTTATTGGACCCAATCCAGCATTGCGGCCAATTAATACGGAAGGCGCCCAAAAGGTTGGGCAAAAACGGGGTAGATTGAATATCGAAGCAGAGGATGATTCACAGCCCAAAAAGAAGGTCCGTTTTGGGGCTCCTGCTACACAGTGGATTTCAATTTACAATGCAAGACAACCGATGAAACAAAGGTATCATTATAATGTAACTGATGCAAGATTAGCACAGCATGTTGAGAGAGGGATTGCAGATGGCCTTCTTATTACTTGTGTCTCTTCTTGTACCAATCTTTGGGCACTCATTATGGATGCTGCAACTGGTTTTACAAGTCAAGTTTACAAGTTATCACCTTTTTTCTTACACAAGGAATGGATTATGGAACAATGGGATAAGAACTATTACATTACTTCGATTGCAGGGGCCAATAATGGAAGCTCTGTTGTGGTGATGTCAAAAGGTACACAGTATACTCAACAATCATACAAAGTAAGCGACTCTTTCCCCTACAAATGGATAAACAGGAAGTGGAAAGAAGGTTTTCAGGTCACCTCCATGGCGACTGCTGGAACTCGCTGGGGTGTTGTTATGTCTCGAAATGCTGGATTCAGTGATCAGGTGGTTGAACTTGATTTTCTGTATCCAAGTGAGGGCATTCATAAACGCTGGGATAATGGTTATAGGATTACAGCAACTGCAGCTACCTGGGATCAATCTGCTCTTATATTAAGTATTCCCAGGCGCAAGCCTAATGATGAAACCCAGGAAACCCTGCGTACATCTCAGTTTCCCAGCACACATGTTAAGGAAAAATGGGCAAAAAACCTTTATCTTTCCTGTTTGTGCTATGGGCGCACGGTTTGTTGA 2016 0.4439 MPELRSGPRRGRAAAVGRKGPQPANKNVDVKTRAAPVKGRPRTRLAAKELQVQEPPIVIISVAEENKIKEEGGAGVMGGHESGGLSPNKVVVPEDEGNTPPIPDKVQVGGSPLYKVDRKLGKGGFGQVYVGRRERANGPGPLEVALKFEHRNSKGCNYGPPYEWQVYNTLGGSHGIPKVHYKGRQGEFYIMVMDILGPSLWDVWNNSNQTMSAEMVSCIAVESLSILEKMHTKGYVHGDVKPENFLLGQPATVQEKKLFLVDLGLATKWKDSSNGQHVEYDQRPDMFRGTVRYASVHAHLGRTASRRDDLESLAYTLVFLHKGRLPWQGYQGDSKSFLVCKKKMGVSPEMLCCFCPAPFRQFLEIVVNMRFDEEPNYSNLISLFDGVIGPNPALRPINTEGAQKVGQKRGRLNIEAEDDSQPKKKVRFGAPATQWISIYNARQPMKQRYHYNVTDARLAQHVERGIADGLLITCVSSCTNLWALIMDAATGFTSQVYKLSPFFLHKEWIMEQWDKNYYITSIAGANNGSSVVVMSKGTQYTQQSYKVSDSFPYKWINRKWKEGFQVTSMATAGTRWGVVMSRNAGFSDQVVELDFLYPSEGIHKRWDNGYRITATAATWDQSALILSIPRRKPNDETQETLRTSQFPSTHVKEKWAKNLYLSCLCYGRTVC* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0047 671 SUPERFAMILY Protein kinase-like (PK-like) 114 392 IPR011009 -
Lja5g0047 671 SMART serkin_6 114 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0047 671 MobiDBLite consensus disorder prediction 1 42 - -
Lja5g0047 671 PANTHER CASEIN KINASE I-LIKE PROTEIN 65 644 - -
Lja5g0047 671 Gene3D Transferase(Phosphotransferase) domain 1 102 428 - -
Lja5g0047 671 ProSitePatterns Protein kinases ATP-binding region signature. 120 147 IPR017441 GO:0005524
Lja5g0047 671 Pfam Protein kinase domain 114 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0047 671 CDD STKc_CK1 114 384 - -
Lja5g0047 671 PANTHER CASEIN KINASE-RELATED 65 644 - -
Lja5g0047 671 ProSiteProfiles Protein kinase domain profile. 114 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja5g0047 671 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0047 Lja-Chr5 511364 522445 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0047 108 342 AGC Kinase Gene Family AT3G08730 22.363 6.53e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Lja5g0047 Pkinase 7.4e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0047 - - gmx:100783819 1147.88