Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0044 ATGGTATCAGCTACAATTAGGCGAATTGTTTCACCCTGTTGGAGACCATTTGATGATGATAGTGGAAGTTCTAGTAGGAACGGGGATGCAAGTGGACGTTTTGATGGTTTGTTGTGGTATAAAGATTCAGGAAGACACGCGAGTGGTGAATTCTCAATGGCGGTTGTTCAAGCAAACAATTTGTTGGAGGATCACAGCCAACTTGAATCAGGTCCCATGAGCTCACATGTAGGAAGTCCTCAAGGAACTTTTGTTGGTGTATATGATGGGCATGGAGGTCCAGAAGCCTCTCGGTTTATCAATGACCGTCTATATAAAAATATCAAGAAATTCACTTCAGAAAATCAGGGAATGTCATCTGATGTTATCAATAAAGCATTCATGGCAACAGAAGAAGAATTTCTTTCTCTGGTAAAGAAGCAGTGGCTACTCAAGCCACAGTTAGCATCGGTTGGATCTTGCTGTTTGGTAGGCATAATATATAGTGGGGAGCTCTATGTTGCAAATTCAGGAGATTCTCGTGCAGTTTTAGGTAGAATGGATGAGGCTACAAAAGAGATTAAAGCAGTTCAATTATCCTATGAGCACAATGCTAGCTTTGAATCTGTCAGAGACGAGTTACGCTCATTGCACCCTCATGATCCGCAGATTGTTGTGATGAAACACAAGGTCTGGCGTGTGAAGGGTCTGATTCAGGTTTCAAGATCCCTTGGTGACGCCTATCTAAAGAAGGCGGAGTTTAACAAAGAACCACTACTGTCAAAATTTCGACTCCCAGAACCGTTTGAACAGCCAATCCTTAAGGCTGAACCAACAGTCCTAGTGCATAAACTCCATCCTCAAGATCAATTTCTTATATTTGCATCCGATGGATTATGGGAGCACATGAGCAATCAAGAAGCAGTTGATCTTGTCCAGAGCTGTCCACGTAATGGAGTAGCCAAGAAACTTGTCAAAGCTGCAATTTGTGAAGCTGCGAAGAAAAGAGAAATGAGATACTCAGACTTGCAAAAGATTGAACGTGGGGTGAGGAGACATTTCCATGATGACATCACGGTTATAGTTTTGTATCTTGATTCACATCTAATTAGCCATTGTAATTCACGTTGTCCCACCATTTCTATCAAAGGAGGTGGTGATTTTGGTTTGAATACTTAG 1158 0.418 MVSATIRRIVSPCWRPFDDDSGSSSRNGDASGRFDGLLWYKDSGRHASGEFSMAVVQANNLLEDHSQLESGPMSSHVGSPQGTFVGVYDGHGGPEASRFINDRLYKNIKKFTSENQGMSSDVINKAFMATEEEFLSLVKKQWLLKPQLASVGSCCLVGIIYSGELYVANSGDSRAVLGRMDEATKEIKAVQLSYEHNASFESVRDELRSLHPHDPQIVVMKHKVWRVKGLIQVSRSLGDAYLKKAEFNKEPLLSKFRLPEPFEQPILKAEPTVLVHKLHPQDQFLIFASDGLWEHMSNQEAVDLVQSCPRNGVAKKLVKAAICEAAKKREMRYSDLQKIERGVRRHFHDDITVIVLYLDSHLISHCNSRCPTISIKGGGDFGLNT* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0044 385 Pfam Protein phosphatase 2C 71 326 IPR001932 -
Lja5g0044 385 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 8 380 - -
Lja5g0044 385 ProSiteProfiles PPM-type phosphatase domain profile. 47 358 IPR001932 -
Lja5g0044 385 CDD PP2Cc 51 358 IPR001932 -
Lja5g0044 385 Gene3D - 40 369 IPR036457 -
Lja5g0044 385 SUPERFAMILY PP2C-like 77 359 IPR036457 -
Lja5g0044 385 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169
Lja5g0044 385 PANTHER ALPHABET, ISOFORM E-RELATED 8 380 - -
Lja5g0044 385 SMART PP2C_4 3 356 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0044 Lja-Chr5 492608 496551 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0044 3 382 PP2C-type Phosphatase Gene Family AT3G12620 73.158 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0044 K01102 - gmx:100807559 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja5g0044 5 492608 496551 Lja5g0044 5 492608 496551 ECH