Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0018 ATGAGGCTCAGAGGCGACACCATCGACGGCGACGACGAACAAGCCCGAGCGCTCCCGGAAGAGGACGAGGATGACCCCGAACACGACACCTCTTGTCGCAGGGTCATTCGCTCACAATTCCTCAAACTCAAGACTCTCATTAATGAGAAAAGGGATGACTTGATCAACACCGATTCCGACAAGTTCGAAACCATATTGGACCAATTTCACAAGCTGCACGAGCAAGTTAAGAAGCCAAGAGAACAGGTTGCTGATGCTGAGGCTCTGCTTGATTTCACCCGCACACTCGTTGGATCTGTCAAGTCTCTCGTCAATGAGGGTATCACCCCTTCTCACTTTGTTTCTTCTCTCCTCAAATACTATCACCAACCTTCATTCAACTGGCAAAAACTTGGCCTTGCTGTTTCCCCCTTTTTCCCAACCGTCGTCAATGGCTCTTCTACCATGCTTGGTCCAATGGAAAATCAACTCAAGCAACGCAAAGTACCCGCCCGAGGGAAAAGAAATGCTGGCCCTACTACAACTGCTAGGCCTCAACAGCTTGATGAGGCCACTTTAGGAGATGAAAAAACCGACACTGACAAAAACATGGCAACTATGTTTAACGTTTTGAGGAAGATGAAACTGGTACCGCTTGAAAACCTTATTTTGAACAGAACTTCTTTTGCTCAGACCGTGGAAAATCTGTTTGCCCTCTCATTCCTGGTAAAAGATGGTCGTGCTGAGATCAAAATGGATGAAAGTCACGCACACTATGTTTCTCCTAAAAATGCTCCAACTGCAAACTCAGTAATGTCGAAAGAAGTTACTTACACTCATTTCATGTTCAGATATGATTACCGAGATTGGAAGTTAATGAAGGATATCGTGCCTGAGGGGAAGGAGCTAATGCCACATAGGATTCAAGTTTGCACTGAGGATGCTCAGGAAGAGATGGGTGGTGGCGACCATTCCCAAGCAGCTTTGGCTGTATCACCTATCAGAGCTATAACACCTATCCGGAAGCTGAATCGGAACCGAGGGCGGGTTGTGCAGGAGGAAAGCATTGTTCAAGAATCTCCTGAATGTGATAAGGAAAATGATCCTGGAGCTGCTGCTATCCGCAGGTGCAAGCGTAAGATCCATCCAGAATGA 1134 0.4683 MRLRGDTIDGDDEQARALPEEDEDDPEHDTSCRRVIRSQFLKLKTLINEKRDDLINTDSDKFETILDQFHKLHEQVKKPREQVADAEALLDFTRTLVGSVKSLVNEGITPSHFVSSLLKYYHQPSFNWQKLGLAVSPFFPTVVNGSSTMLGPMENQLKQRKVPARGKRNAGPTTTARPQQLDEATLGDEKTDTDKNMATMFNVLRKMKLVPLENLILNRTSFAQTVENLFALSFLVKDGRAEIKMDESHAHYVSPKNAPTANSVMSKEVTYTHFMFRYDYRDWKLMKDIVPEGKELMPHRIQVCTEDAQEEMGGGDHSQAALAVSPIRAITPIRKLNRNRGRVVQEESIVQESPECDKENDPGAAAIRRCKRKIHPE* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0018 377 Pfam Nse4 C-terminal 210 291 IPR014854 -
Lja5g0018 377 MobiDBLite consensus disorder prediction 1 31 - -
Lja5g0018 377 MobiDBLite consensus disorder prediction 351 377 - -
Lja5g0018 377 MobiDBLite consensus disorder prediction 351 371 - -
Lja5g0018 377 PANTHER NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 4 12 352 - -
Lja5g0018 377 PANTHER UNCHARACTERIZED 12 352 IPR027786 GO:0005634|GO:0006281|GO:0030915
Lja5g0018 377 MobiDBLite consensus disorder prediction 159 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0018 Lja-Chr5 188398 190890 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0018 31 374 Non-SMC Element family AT1G51130 50.139 9.25e-111 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0018 K22825 - gmx:100792117 479.944