Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0017 ATGATTTCAAATTCGGAAGCTTCAGATTCTAGTGAAATCAATTTTGCATTTTGTGCAGCAAAACGTGCAAGGCATGAAGACAATGTTGCTGCAGGTGCAGGGTGTGAGAGGTTCAAAGGGATTGTGCCTCAGCAAAATGGACATTGGGGTGCCCAGATATATTCTAACCACCAGAGAATATGGTTGGGGACTTTCAAATCTGAAACAGAGGCTGCTATGGCTTATGACAGCGCCACCATCAAGCTCAGAAGCGGAGAAAGCCATAGGAACTTCCCATGGAATGATCAAACGGTTCAGGAGCCTCGCTTCCAAAGCCATTACAGCATAGAAACAGTGCTGAACATGATCAGAAATGGCACATATCAAACCAAATTTTCAACCTTTTTGAGGACCCAGAATTCTCTTGAAGGAATTGGAACCAGTACCAAACATTTAGGCGTGAAGGGTCATGAACAATTCTCTTGCACACATCTTTTCCAGAAGGAATTGACACCGAGTGATGTGGGTAAACTCAACAGGCTTGTCATCCCTAAGAAACATGCAGTCACCTATTTTCCTTCGGTTTGTGGCGGTTCAGGAGCAACAAATGGTGGCGGTGAAATGGATGGTGTTGACATTGAAGTTGTGTTTTATGACAAGCTCATGCGGTTGTGGAAATTTCGATACTGCTATTGGAAGAGCAGCCAGAGCTATGTGTTCACGAGAGGGTGGAATCGGTTTGTGAAGGATAAGAAATTGAAGGCTAAAGACATCATTGCATTTTACATGTGTGAGCCTATAAGCTGCAGGATAACAGGAGAAGTGTTTTCTTTGATTGATGTAATCTATAATAATAATAATAATAATAATAATAATAATGCAGATCATAGAAGGCAATGTGTAGATGAGACACAAAATTTGGGAAACAAGTTAATTTGCAGTGATGAAGTAGAAGATCAAGATGAAGGACAAGAGACTAAGGATAGAAAGGACGATTTGAATGCACAAAGAGGTTTGAGGCTCTTTGGCGTAAGTATCAACTGA 1023 0.4125 MISNSEASDSSEINFAFCAAKRARHEDNVAAGAGCERFKGIVPQQNGHWGAQIYSNHQRIWLGTFKSETEAAMAYDSATIKLRSGESHRNFPWNDQTVQEPRFQSHYSIETVLNMIRNGTYQTKFSTFLRTQNSLEGIGTSTKHLGVKGHEQFSCTHLFQKELTPSDVGKLNRLVIPKKHAVTYFPSVCGGSGATNGGGEMDGVDIEVVFYDKLMRLWKFRYCYWKSSQSYVFTRGWNRFVKDKKLKAKDIIAFYMCEPISCRITGEVFSLIDVIYNNNNNNNNNNADHRRQCVDETQNLGNKLICSDEVEDQDEGQETKDRKDDLNAQRGLRLFGVSIN* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0017 340 SUPERFAMILY DNA-binding pseudobarrel domain 156 260 IPR015300 -
Lja5g0017 340 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Lja5g0017 340 ProSiteProfiles B3 DNA-binding domain profile. 159 278 IPR003340 GO:0003677
Lja5g0017 340 Pfam B3 DNA binding domain 159 257 IPR003340 GO:0003677
Lja5g0017 340 SMART B3_2 159 275 IPR003340 GO:0003677
Lja5g0017 340 Gene3D - 154 270 IPR015300 -
Lja5g0017 340 CDD B3_DNA 157 256 IPR003340 GO:0003677
Lja5g0017 340 ProSiteProfiles AP2/ERF domain profile. 37 92 IPR001471 GO:0003700|GO:0006355
Lja5g0017 340 Gene3D AP2/ERF domain 36 93 IPR036955 GO:0003700|GO:0006355
Lja5g0017 340 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 3 340 - -
Lja5g0017 340 CDD AP2 37 94 IPR001471 GO:0003700|GO:0006355
Lja5g0017 340 Pfam AP2 domain 47 83 IPR001471 GO:0003700|GO:0006355
Lja5g0017 340 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 3 340 IPR044800 GO:0003700
Lja5g0017 340 SMART rav1_2 37 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0017 Lja-Chr5 185640 186662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0017 30 339 RAV Transcription Factor Family AT1G50680 51.064 6.63e-100 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lja5g0017 B3 1.7e-23 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0017 K09287 - gmx:102660503 398.282