Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0015 ATGGATCGAAAGAGGGGAAGACCTGAAGGTGCCTTCAATGGCAATGGCGGCGCCAAGAAATCCAAGCCAGAAATGGAGTCCTTCACAACTGGTTTAGGAAGCAAATCCAAGCCATGCACAAAGTTTTTCAGCACCTCTGGGTGTCCATTTGGTGACGGATGCCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCTATCTCTCAGATGATCAATGTTGGAAGCAGTCCTACTATTCCACAAATGGGGAGAAATCCAGTTCCTCCACCATCCTTCCCAGATGGATCTTCTCCTCCAGTTGTTAAAACCCGCATGTGCAACAAGTATAATTCATCTGAAGGTTGCAAATTTGGTGATAGATGCCACTTTGCCCATGGGGAGTGGGAACTTGGCAGGCCCACACTCCCGCCATATGAAGATCCTCGTGGTTTCGGTCAAATGCAAAGTAATAGGGGTGGTGGGCGAATTGAGCCCCCACCTCCAGGTCGTGGAGCTGCTGCTGCTGGCTTTGGAGCCTCGGCTACTGCCAAGATTAGTATCAATGCTTCCCTAGCTGGAGCTATCATTGGAAAAAATGGTGTCAACTCCAAGCAAATCTGTCGTGTAACAGGAGCTAAACTTTCCATAAGGGAACATGACTCTGATCCCAACCTTAAAAATATCGAGCTTGAAGGCAGTTTTGATCAGATCAACCAAGCCAGTGCAATGGTTCATGAACTTATTCTAAGTGTAAGTTCTGTCTCTGGGCCTCCAGCGAAAAACTTTAGCTCACAGCATTCTGCCCCTGGGAGCAACTTGAAGACTAAGCTGTGTGAAAACTTTGCCAAAGGCTCGTGCACTTTTGGGGAAAGGTGCCACTTTGCTCATGGAACAGATGAATTACGCAGGCCTGGAATGTGA 900 0.4778 MDRKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHYVPGGFKAISQMINVGSSPTIPQMGRNPVPPPSFPDGSSPPVVKTRMCNKYNSSEGCKFGDRCHFAHGEWELGRPTLPPYEDPRGFGQMQSNRGGGRIEPPPPGRGAAAAGFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHELILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAKGSCTFGERCHFAHGTDELRRPGM* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0015 299 ProSiteProfiles Zinc finger C3H1-type profile. 33 61 IPR000571 GO:0046872
Lja5g0015 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 102 127 IPR000571 GO:0046872
Lja5g0015 299 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 267 290 IPR000571 GO:0046872
Lja5g0015 299 Gene3D - 263 296 - -
Lja5g0015 299 Gene3D - 95 132 - -
Lja5g0015 299 Pfam RNA-binding, Nab2-type zinc finger 38 58 - -
Lja5g0015 299 SUPERFAMILY CCCH zinc finger 34 59 IPR036855 GO:0046872
Lja5g0015 299 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 168 244 IPR036612 GO:0003723
Lja5g0015 299 CDD KH-I 177 238 - -
Lja5g0015 299 SMART c3hfinal6 33 60 IPR000571 GO:0046872
Lja5g0015 299 SMART c3hfinal6 102 127 IPR000571 GO:0046872
Lja5g0015 299 SMART c3hfinal6 265 291 IPR000571 GO:0046872
Lja5g0015 299 Gene3D K Homology domain, type 1 167 262 IPR036612 GO:0003723
Lja5g0015 299 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 52 3 297 - -
Lja5g0015 299 PANTHER CCCH ZINC FINGER/TIS11-RELATED 3 297 IPR045877 GO:0003729
Lja5g0015 299 Pfam KH domain 176 238 IPR004088 GO:0003723
Lja5g0015 299 SUPERFAMILY CCCH zinc finger 98 131 IPR036855 GO:0046872
Lja5g0015 299 MobiDBLite consensus disorder prediction 148 168 - -
Lja5g0015 299 ProSiteProfiles Zinc finger C3H1-type profile. 265 292 IPR000571 GO:0046872
Lja5g0015 299 SMART kh_6 172 242 IPR004087 GO:0003676
Lja5g0015 299 ProSiteProfiles Zinc finger C3H1-type profile. 101 128 IPR000571 GO:0046872
Lja5g0015 299 SUPERFAMILY CCCH zinc finger 265 295 IPR036855 GO:0046872
Lja5g0015 299 MobiDBLite consensus disorder prediction 1 34 - -
Lja5g0015 299 ProSiteProfiles Type-1 KH domain profile. 173 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0015 Lja-Chr5 175936 180390 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lja5g0015 KH_1 1.8e-10 CL0007
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0015 - - gmx:100792652 489.189