Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja5g0015 | ATGGATCGAAAGAGGGGAAGACCTGAAGGTGCCTTCAATGGCAATGGCGGCGCCAAGAAATCCAAGCCAGAAATGGAGTCCTTCACAACTGGTTTAGGAAGCAAATCCAAGCCATGCACAAAGTTTTTCAGCACCTCTGGGTGTCCATTTGGTGACGGATGCCATTTCCTGCATTATGTTCCTGGTGGCTTCAAAGCTATCTCTCAGATGATCAATGTTGGAAGCAGTCCTACTATTCCACAAATGGGGAGAAATCCAGTTCCTCCACCATCCTTCCCAGATGGATCTTCTCCTCCAGTTGTTAAAACCCGCATGTGCAACAAGTATAATTCATCTGAAGGTTGCAAATTTGGTGATAGATGCCACTTTGCCCATGGGGAGTGGGAACTTGGCAGGCCCACACTCCCGCCATATGAAGATCCTCGTGGTTTCGGTCAAATGCAAAGTAATAGGGGTGGTGGGCGAATTGAGCCCCCACCTCCAGGTCGTGGAGCTGCTGCTGCTGGCTTTGGAGCCTCGGCTACTGCCAAGATTAGTATCAATGCTTCCCTAGCTGGAGCTATCATTGGAAAAAATGGTGTCAACTCCAAGCAAATCTGTCGTGTAACAGGAGCTAAACTTTCCATAAGGGAACATGACTCTGATCCCAACCTTAAAAATATCGAGCTTGAAGGCAGTTTTGATCAGATCAACCAAGCCAGTGCAATGGTTCATGAACTTATTCTAAGTGTAAGTTCTGTCTCTGGGCCTCCAGCGAAAAACTTTAGCTCACAGCATTCTGCCCCTGGGAGCAACTTGAAGACTAAGCTGTGTGAAAACTTTGCCAAAGGCTCGTGCACTTTTGGGGAAAGGTGCCACTTTGCTCATGGAACAGATGAATTACGCAGGCCTGGAATGTGA | 900 | 0.4778 | MDRKRGRPEGAFNGNGGAKKSKPEMESFTTGLGSKSKPCTKFFSTSGCPFGDGCHFLHYVPGGFKAISQMINVGSSPTIPQMGRNPVPPPSFPDGSSPPVVKTRMCNKYNSSEGCKFGDRCHFAHGEWELGRPTLPPYEDPRGFGQMQSNRGGGRIEPPPPGRGAAAAGFGASATAKISINASLAGAIIGKNGVNSKQICRVTGAKLSIREHDSDPNLKNIELEGSFDQINQASAMVHELILSVSSVSGPPAKNFSSQHSAPGSNLKTKLCENFAKGSCTFGERCHFAHGTDELRRPGM* | 300 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja5g0015 | 299 | ProSiteProfiles | Zinc finger C3H1-type profile. | 33 | 61 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 102 | 127 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 267 | 290 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | Gene3D | - | 263 | 296 | - | - | |
Lja5g0015 | 299 | Gene3D | - | 95 | 132 | - | - | |
Lja5g0015 | 299 | Pfam | RNA-binding, Nab2-type zinc finger | 38 | 58 | - | - | |
Lja5g0015 | 299 | SUPERFAMILY | CCCH zinc finger | 34 | 59 | IPR036855 | GO:0046872 | |
Lja5g0015 | 299 | SUPERFAMILY | Eukaryotic type KH-domain (KH-domain type I) | 168 | 244 | IPR036612 | GO:0003723 | |
Lja5g0015 | 299 | CDD | KH-I | 177 | 238 | - | - | |
Lja5g0015 | 299 | SMART | c3hfinal6 | 33 | 60 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | SMART | c3hfinal6 | 102 | 127 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | SMART | c3hfinal6 | 265 | 291 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | Gene3D | K Homology domain, type 1 | 167 | 262 | IPR036612 | GO:0003723 | |
Lja5g0015 | 299 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 52 | 3 | 297 | - | - | |
Lja5g0015 | 299 | PANTHER | CCCH ZINC FINGER/TIS11-RELATED | 3 | 297 | IPR045877 | GO:0003729 | |
Lja5g0015 | 299 | Pfam | KH domain | 176 | 238 | IPR004088 | GO:0003723 | |
Lja5g0015 | 299 | SUPERFAMILY | CCCH zinc finger | 98 | 131 | IPR036855 | GO:0046872 | |
Lja5g0015 | 299 | MobiDBLite | consensus disorder prediction | 148 | 168 | - | - | |
Lja5g0015 | 299 | ProSiteProfiles | Zinc finger C3H1-type profile. | 265 | 292 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | SMART | kh_6 | 172 | 242 | IPR004087 | GO:0003676 | |
Lja5g0015 | 299 | ProSiteProfiles | Zinc finger C3H1-type profile. | 101 | 128 | IPR000571 | GO:0046872 | |
Lja5g0015 | 299 | SUPERFAMILY | CCCH zinc finger | 265 | 295 | IPR036855 | GO:0046872 | |
Lja5g0015 | 299 | MobiDBLite | consensus disorder prediction | 1 | 34 | - | - | |
Lja5g0015 | 299 | ProSiteProfiles | Type-1 KH domain profile. | 173 | 237 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja5g0015 | Lja-Chr5 | 175936 | 180390 | Dispersed |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Lja5g0015 | KH_1 | 1.8e-10 | CL0007 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja5g0015 | - | - | gmx:100792652 | 489.189 |