Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja5g0003 ATGGGATCATGCCTCTCAGGTTTGGGTTTGGGTTCAGGTTCATCTCCTGCTCCTCCTTCTCCTTCTCCTTCTCCTTGTGAATCATCCACATCCACATCCACATCCACATCCACATCCACATCCACCGCTGCTGCTGATTATAACGTCGAAATACGGTTGCACAGAGTTCGTGGCAGACTCGTCTTGAACGGATCCTCCCACGTTGCATCCTTGTTCTCTAAGCAAGGAAGAAAAGGGATCAACCAGGATGCTATGCTTCTTTGGGAGAACTTTCGTTCAATGGAGGACACCGTTTTTTGTGGTGTTTTTGATGGCCATGGACCTTATGGCCATATGGTTGCCAAGAAAGTCAGGGATTCTTTCCCTTTAAAGCTCATGGCTCAATGTGAATACATGGATGATCTTGATCTTTCAGATGGACATGGACTCATCAATGATAATGATATTCATGGGATTAATTTTGGGCACCACCTTGTTATTGCAAATGTCGGGGACTCCAGAGCTGTATTGGCTACCCGAGATCAACATGATGATTCTATTTTTGCTCATCAGTTGACCACTGACTTTAAGCCAAATCTTCCAAGGGAAGCAGAGAGGATCAGGCTTTGTAAAGGAAGGGTGTTTGCCATTGAGAAAGAACCACAAGTTGCTCGAGTTTGGTTGCCTAACGTTGATGCCCCTGGCCTTGCTATGACACGGGCTTTTGGAGATTTTTGCCTGAAGGACTACGGCGTCATCTCTGTTCCTGATGTCTCACATCACCGCCTCACTGAGAAAGATGAATTTGTTGTATTAGCCACAGATGGGGTTTGGGATGTTTTATCAAACAAAGAGGTTGTGGGGATTGTGGCATCTGCTCCACGGTCTTCTGCAGCTAAAGTACTGGTTGAATCAGCCGTTCAAGCATGGAGGACGAAGCTTCCCACTTCTAAGGTTGATGATTGCTCTGTAGTTTGCCTCTTCTTTGATACTCATGCAAACCTAAATTCAGCAAATAACATAAACAACTTGATACCAGAGGCATCAATTAACCATTCTGACACTGTAGTTCAGAAATCACCACCATATAGGGAGGGAGGGGACAAGGAAATCACAGTTGTAACCTGA 1107 0.4526 MGSCLSGLGLGSGSSPAPPSPSPSPCESSTSTSTSTSTSTSTAAADYNVEIRLHRVRGRLVLNGSSHVASLFSKQGRKGINQDAMLLWENFRSMEDTVFCGVFDGHGPYGHMVAKKVRDSFPLKLMAQCEYMDDLDLSDGHGLINDNDIHGINFGHHLVIANVGDSRAVLATRDQHDDSIFAHQLTTDFKPNLPREAERIRLCKGRVFAIEKEPQVARVWLPNVDAPGLAMTRAFGDFCLKDYGVISVPDVSHHRLTEKDEFVVLATDGVWDVLSNKEVVGIVASAPRSSAAKVLVESAVQAWRTKLPTSKVDDCSVVCLFFDTHANLNSANNINNLIPEASINHSDTVVQKSPPYREGGDKEITVVT* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja5g0003 368 MobiDBLite consensus disorder prediction 26 41 - -
Lja5g0003 368 MobiDBLite consensus disorder prediction 1 41 - -
Lja5g0003 368 PANTHER ALPHABET, ISOFORM E-RELATED 1 136 - -
Lja5g0003 368 PANTHER ALPHABET, ISOFORM E-RELATED 153 337 - -
Lja5g0003 368 CDD PP2Cc 68 322 IPR001932 -
Lja5g0003 368 Gene3D - 144 333 IPR036457 -
Lja5g0003 368 SUPERFAMILY PP2C-like 65 323 IPR036457 -
Lja5g0003 368 ProSiteProfiles PPM-type phosphatase domain profile. 68 322 IPR001932 -
Lja5g0003 368 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 1 136 - -
Lja5g0003 368 PANTHER PROTEIN PHOSPHATASE 2C 33-RELATED 153 337 - -
Lja5g0003 368 Pfam Protein phosphatase 2C 154 299 IPR001932 -
Lja5g0003 368 SMART PP2C_4 57 320 IPR001932 -
Lja5g0003 368 Gene3D - 65 143 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja5g0003 Lja-Chr5 40973 42460 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja5g0003 20 322 PP2C-type Phosphatase Gene Family AT3G05640 41.888 2.50e-89 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja5g0003 - - cam:101504803 394.43