Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4405 ATGGATCACGAGAGGGACCTGGAGACAGAGGGGTTGATGGCGATGGGGAACGATGGCAGAGAAGATAGGACAGAAAGGGAGGGGCTGAGCCTGAGCCTGAGCCTCAGAGATCCTCTGCTTGTCAAGAATAACAGGATGAACACCACTTCCCAACTTGCCATTGTCGGAGCCAATGTTTGTCCTATTGAAAGTCTTGACTACGAGATCATTGAGAATGATCTTTTCAAGCAAGACTGGAGATCTAGAGCAAAGCCTGAGATAGGGCAGTATATTATCCTAAAGTGGACCTTTGCACTTCTTATTGGTTTAGGCACCGGGCTTGTTGCTTTTTTTAATAACATTGGAGTTGAGAATATTGCTGGTTTCAAGCTTCTACTCACCAACAATCTCATGCTCGAGCAAAAGTATAAGCAGGCCTTTGCGGTGTATGTTGGCTGTAACATGGTTTTAGCCATTGCTGCTGGAGTCCTCTGTGCCTACATATCCCCTGCAGCAGCCGGGTCTGGCATACCTGAGGTCAAGGCATACCTCAACGGTGTAGATGCTCCTTCTATATTGGCCCCTAGTACCCTCTTTGTAAAGATATTCGGTTCAATTTTCGGGGTTGCGGCTGGTTTTACTGTGGGCAAGGAAGGACCTATGGTACACACTGGTGCTTGCATAGGTAATTTACTTGGACAAGGTGGTTCTCGAAAATATGGACTGACCTGGAAATGGCTGAGACATTTTAAAAATGACCGCGACCGAAGGGATTTGGTGACCTGCGGTGCAGCTGCGGGCGTTGCCGGTGCCTTCCGTGCCCCAGTTGGTGGTGTCCTTTTTGCACTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCTCTTCTTTGGCGAACATTTTTCACTACAGCTGTGGTAGCTGTAGTGCTAAGAGGTTTCATTGGATTTTGCCGTGCTGGAAAATGTGGTCTTTTTGGGGAAGGAGGTTTGATCATGTTTGATGTTAATTCAGTAACGCCTGCATACAGCATACCTGACCTCTTGGTAGTTATATTACTTGGAGTAATTGGAGGTCTTCTTGGAAGTCTCTACAATTACCTTGTCGATAAGGTCCTTCGCACTTATGCCATCATAAATGAGAAAGGCCCAATTTGCAAAGTTTTACTTGTCATGGTTATCTCCTTATTGACCTCTTGCTGTTCATTTGGACTTCCATGGCTATCAAAGTGCATCCCTTGTCCTCCTCATTTGGGGGATGATCAGTGCCCAACTGGAGGTCGCTCTGGACACTACAAGAATTTTCAGTGTCCACCTAATCACTACAATGACCTTGCTTCTCTTTTTTTCACTACTAACGACGATGCTATTCGCAACCTGTTTGTTGCTGGCTCTGACAAGAGATTTCTGCTCTCTAGTCTTGTGATTTTCTTTGTGGCCATATACTTTCTTGGAATCATCACTTATGGCATTGCTATTCCCTCTGGCCTCTTTATTCCAGTCATACTTGCTGGGGCTTCTTATGGCCGCGTTGCCGGAAGTCTTTTAAGTCCGTTTAGTGTTCTTGATGTGGGTTTGTTTGCTCTCCTTGGCGCTGCATCCTTCCTTGGTGGCACCATGAGAATGACTGTTTCACTTTGTGTCATACTTCTTGAACTTACTAATAACCTGCTCATGCTCCCTTTAGTCATGTTGGTTCTCCTTATTTCAAAGTCTGTGGCTGATTGTTTTAACAAAGGTGTTTATGATCAGATTGTGGAAATGAAGGGGTTGCCTTATATGGAAGCACATGCAGAACCATATCTGAGGCAACTAGTTGCAAGTGATGTTGTTTCAGGTCCCTTGTTTACATTTTCTGGGATTGAAAAAGTGGGGAATATTGTGCATACTTTAAAGGTCACACGACATAATGGATTTCCTGTAATTGATGAGCCTCCTGTGTCAGATGCTCCTGAGTTGTGTGGGTTGGTTTTGAGGTCTCATCTGCTCGTGCTTCTTAAACACAAGACATTTACAAAGCAAAGGATGATCATGAATGACAATGGACCCTCCAAGTTAAAGGCACATGATTTTGCAAAGCCAGGTTCAGGCAAGGGGATCGAGGTGGATGATTTAGACATTTCTGTGGAGGAGATGGAAATGTATGTTGATCTCCATCCCATTACTAACAGGTCACCATATACAGTTGTTGAAACAATGTCTCTAGCTAAAGCTGCTCTTCTTTTCCGCGACCTTGCCCTCAGGCACTTGTTAGTGGTTCCAAAGACACCAGGAAGGCCTCCGATTGTGGGGATCCTAACAAGGCACGATTTCATGCCTGAGCATGTTTTGGGATTATACCCTCACTGCAGCTCAAGCTAG 2334 0.4524 MDHERDLETEGLMAMGNDGREDRTEREGLSLSLSLRDPLLVKNNRMNTTSQLAIVGANVCPIESLDYEIIENDLFKQDWRSRAKPEIGQYIILKWTFALLIGLGTGLVAFFNNIGVENIAGFKLLLTNNLMLEQKYKQAFAVYVGCNMVLAIAAGVLCAYISPAAAGSGIPEVKAYLNGVDAPSILAPSTLFVKIFGSIFGVAAGFTVGKEGPMVHTGACIGNLLGQGGSRKYGLTWKWLRHFKNDRDRRDLVTCGAAAGVAGAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAVVLRGFIGFCRAGKCGLFGEGGLIMFDVNSVTPAYSIPDLLVVILLGVIGGLLGSLYNYLVDKVLRTYAIINEKGPICKVLLVMVISLLTSCCSFGLPWLSKCIPCPPHLGDDQCPTGGRSGHYKNFQCPPNHYNDLASLFFTTNDDAIRNLFVAGSDKRFLLSSLVIFFVAIYFLGIITYGIAIPSGLFIPVILAGASYGRVAGSLLSPFSVLDVGLFALLGAASFLGGTMRMTVSLCVILLELTNNLLMLPLVMLVLLISKSVADCFNKGVYDQIVEMKGLPYMEAHAEPYLRQLVASDVVSGPLFTFSGIEKVGNIVHTLKVTRHNGFPVIDEPPVSDAPELCGLVLRSHLLVLLKHKTFTKQRMIMNDNGPSKLKAHDFAKPGSGKGIEVDDLDISVEEMEMYVDLHPITNRSPYTVVETMSLAKAALLFRDLALRHLLVVPKTPGRPPIVGILTRHDFMPEHVLGLYPHCSSS* 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4405 777 Gene3D Clc chloride channel 87 585 - -
Lja4g4405 777 Gene3D - 586 768 IPR046342 -
Lja4g4405 777 Pfam CBS domain 714 762 IPR000644 -
Lja4g4405 777 ProSiteProfiles CBS domain profile. 713 776 IPR000644 -
Lja4g4405 777 CDD CBS_pair_voltage-gated_CLC_euk_bac 598 765 - -
Lja4g4405 777 PRINTS Chloride channel signature 572 586 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 PRINTS Chloride channel signature 163 180 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 PRINTS Chloride channel signature 534 553 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 PRINTS Chloride channel signature 516 532 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 PRINTS Chloride channel signature 484 504 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 PRINTS Chloride channel signature 194 213 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 PRINTS Chloride channel signature 258 277 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 SUPERFAMILY Clc chloride channel 72 587 IPR014743 -
Lja4g4405 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 23 775 - -
Lja4g4405 777 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g4405 777 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 23 775 - -
Lja4g4405 777 Pfam Voltage gated chloride channel 151 566 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Lja4g4405 777 PRINTS Plant CLC chloride channel signature 279 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g4405 777 PRINTS Plant CLC chloride channel signature 293 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g4405 777 PRINTS Plant CLC chloride channel signature 68 76 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g4405 777 PRINTS Plant CLC chloride channel signature 311 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g4405 777 PRINTS Plant CLC chloride channel signature 436 452 IPR002251 GO:0005247|GO:0006821|GO:0016020
Lja4g4405 777 CDD ClC_6_like 63 585 - -
Lja4g4405 777 SUPERFAMILY CBS-domain pair 589 763 IPR046342 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4405 Lja-Chr4 77772782 77776286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4405 2 773 Ion Channels AT5G49890 75.389 0.0 1138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4405 K05016 - jre:108988922 1149.04