Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4392 ATGGAAGTTTCCAGCAGCCAAGAAGCTGGAGAAATCCCAATTCCAATCCCAATCCCAATCCCAATAAACAGCAGTACTAATTATGGTGGGGGACATGCTGCAGGTAATGGACATGATCACCACATGAATATGCATCATATTCATGACCCAGCTCCACACCATAACCACAACCACAATAACATCATATCTCCCACATCAGCAGCAGTACCTTCAAATGGCTCATCTATGCAATTGCAAGCTGCAGCAGGACTGCAACAGGAGGATGATGGAGCCTACAATAAGAAAGTGGCGATCAGGTACAGAGAATGCCTGAAGAATCATGCAGCAGGAATGGGAGGGAATGCCACAGATGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGAACCATAGAGGCACTCAACTGCTCTGCTTGCAACTGTCACAGAAACTTCCACAGAAAAGAAGTTGAAGGTGAACCACCTGACTACCAACACTTCAACAGGCTTGGTCTTGGGGGAAGGAAATTCATTTTAGGAGGCCATCATCATCATCACCACAAGAACATCTTAACTACTCCTGAGGCTCTGGGGTATCACCACCACCCTACAACAGCAGGTAACAACAACATTCTGCCTTCTAGAACTATATTACCACCCCACCACATGATAATGCCCTACAACATTGGGAGCCTTCTTCCTTCTGAATCTGATGAACAAGAAGATGTTGCGGCTGGTGGAATGGTGGGTAGACCTGCAGGACAGAATCAGATAGTGAAGAAAAGGTTCAGGACAAAATTCACACAGGAGCAGAAAGAGAAAATGCTCAACTTTGCAGACAAGGTTGGTTGGAAGATTCAGAAGCAAGAGGAATCTGCAGTGCAACAATTCTGCCAAGAGATTGGTGTCAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTAGCCAAAAAGAACAATCTCCCAACAACACCATCACAACCTTCTTAA 981 0.4536 MEVSSSQEAGEIPIPIPIPIPINSSTNYGGGHAAGNGHDHHMNMHHIHDPAPHHNHNHNNIISPTSAAVPSNGSSMQLQAAAGLQQEDDGAYNKKVAIRYRECLKNHAAGMGGNATDGCGEFMPSGEEGTIEALNCSACNCHRNFHRKEVEGEPPDYQHFNRLGLGGRKFILGGHHHHHHKNILTTPEALGYHHHPTTAGNNNILPSRTILPPHHMIMPYNIGSLLPSESDEQEDVAAGGMVGRPAGQNQIVKKRFRTKFTQEQKEKMLNFADKVGWKIQKQEESAVQQFCQEIGVKRRVLKVWMHNNKHNLAKKNNLPTTPSQPS* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4392 326 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 38 315 - -
Lja4g4392 326 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 38 315 - -
Lja4g4392 326 MobiDBLite consensus disorder prediction 25 76 - -
Lja4g4392 326 MobiDBLite consensus disorder prediction 38 55 - -
Lja4g4392 326 SUPERFAMILY Homeodomain-like 245 314 IPR009057 -
Lja4g4392 326 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 99 150 IPR006456 -
Lja4g4392 326 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 100 149 IPR006456 -
Lja4g4392 326 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 253 309 IPR006455 -
Lja4g4392 326 Gene3D - 240 315 - -
Lja4g4392 326 MobiDBLite consensus disorder prediction 56 76 - -
Lja4g4392 326 Pfam ZF-HD protein dimerisation region 98 150 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4392 Lja-Chr4 77544994 77546462 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4392 1 318 ZF-HD Transcription Factor Family AT1G14440 44.083 1.02e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lja4g4392 ZF-HD_dimer 1.3e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4392 - - lja:Lj0g3v0058889.1 604.749