Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4387 ATGTCGGAAATGCGGGTGTCTGACCCGAGCAAGCTCCACCTCAAGAAGGAGCTCACCCAAATTCGAAAAGCTGCTCGTGTATTGAGGGATCCTGGCACAACATCTTCCTGGAAATCACCCCTCAGCTCCTCAAGATCTGTAGCTGCATGGAAGGACAGTGGGAGTACAAGGTTCACTGCCACTGCCAACCCCAATTCTCAACTTGATTCAGCACTGCCACCTTCTATCAATGATAAAGACAAGAGGGTCTTCTTGTATAACTGGAAGAATTACAAATCGTCTAGTGAAAAGAGTGGAGTGCCCAAGTACAATGTGGAGGAAGAAGAACAAGAAGAAGAAGATGAAGATGGCGATGGATCTTCTTCACTTCTGGGAAGTTTTGAGGACAGCTTGAGTGACGCACGCAATGCTTGTGATTTGAAGAGTGATGCTGGGACTCGCGCTTCCATTTTCCTCTGTGGGGATGCAAATCCTGTTTCCAAGGGCACACCTGCTGCCAGAAGAACTACCCCTATGAAGAAAAAGAGTAAGAAAACCAACCCTCATCTTGATTTTTTAGCAGCAAAACACCAGCATAATAGACAAACCAATCTAGGTAGAAAACTTGTGAGCTCCAACTCCAAGCCATTGCTAGAGGGGCGTCCTTCCATGCCTTTTTTCACCAGGGATGACTTGGTTGAGCACTCTGATGATACTGAAGATTACTGTCATTCGGAGGATGTAAGAGGGGTTTCCGGGGCCTCTCCTTTGCTTGCCAAACTCAAGAACAAGAATTGGTCTCGTTCTTCCTCCAAGTTGTTGAGAAGAAGCCGGAAAGAGGACTCTTCTTATTCATATAGTACCCCTGCATTGTCAACCAGTTCTTACAATAGGTACTGTGGTCACCGTGATCCAAGCACTGTTGGATCCTGGGATGGTACCACAACCTCAATGAACGATGGTGATGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGCGGAATTCCTTGCTATTGGTCAAAGAGGACACCCAAACACAGAGGGGCGTGTGGGAGGTGTTATTCTCCTTCACTGTCAGACACTTTGAGGAGGAAGGGAAGCAGCATGCTATGTGGAAGTCAAACTTTTTATCCAAACCACAGGAGATCCTTTTCAGCCTCCAACAAGCGGAGAATTTCTTCAAGGAGTGCTCAAGGTGTTCTTCCATTGCTCACCAACAGTGGCGATGTTAGAGAAGGGTCATCTATAGGAACTGGTAGGAGTGATGATGAACTTTCTACAAACTTTGGGGAGCTTGATCTTGAGGGCTTGAGCCGACTGGATGGAAGAAGGTGGTCGACAAGTTGTAGGAGTCAAGAAGGATTGGAGATTGTAGCTCTCAACGGGGAAGGGGAGGATGGAAGCACGCCAGATAACAGTTGGAGTTTCAGCCAGAAGTATAAACCTATGTTCTTTGGTGAGCTGATTGGGCAAAATATTGTGGTTCAGTCACTTATCAATGCTGTTTCAAGGGGCCGAATTGCTCCAGTATATCTGTTTCAAGGTCCCCGTGGGACTGGTAAAACATCAACAGCTAGGATATTTGCTGCTGCCTTGAATTGTGTGGCTTCTGATGAGAGTAATAAGCCTTGTGGCTACTGCAGGGAATGCACTGATTTCATTTCTGGCAAGAGCAGTGATCTCGTGGAAGTTGATGGAACTAATAAGAGGGGAATCGATAAAGCTAGATATCTTCTGAAAAGACTGTCAATTGGGTCTTCATCCTCCTCCTCACGATATACAGTTTTTGTTTTTGATGAGTGTCACTTGTTACCCTCCAAGACATGGCTGGGATTACTCAAGTTTCTGGAAGAACCACCTCAGCGAGTTGTATTCATATTTATAACATCTGATCTTGACAATGTGCCACGGACAATACAATCTCGATGCCAAAAGTACCTTTTTAATAAAATTAAAGATGGGGATATTGTGATCAGGTTGAGGAAAATATCGACTCAGGAGAGCCTCGATGTTGAAACAGATGCACTGGACCTCATTGCTATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAGCAGCTTAGTTTGCTAGGAAAAAGAATTACCACTTCTCTTGTCAATGAACTTGTGGGAGTTGTTTCAGATGAAAAACTATTGGAACTTTTGGAGTTAGCAATGTCATCAGACAATGCAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGGGTTGATCCAATGGTTTTAATGTCTCAACTAGCTGGCCTTATTATGGACATTATTGCTGGATCGTATACTGTCGTTGATGTCAAACCTGATGATTCACACTTTGGCGGACGTAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAAGCTTCTCTCAGAGGCTGAGAAACAGTTAAGAACATCCAGTGAACGCACAACATGGTTCACAGCGACTCTATTACAGCTTGGTTCTATACCTTCTCCAGATCTTACTCAGTCAGGCACCAGTAGGAGGCAGAGCAGCAGCAAGACAACTGAAGATGATCCATCAAGTGCTTCTAGAGATGTTACTTCTTTCAAGCAGAAGTCAGACCTATCCCCCGCATCACATCTAAAAGCAGCAAACGGAAGTTCCGTCCATCAAAAGGTTATATCCTCAAGGATTGATGGTTTCATCAAGAGACCGAAGCCGTCAAATAGCCCTGCTAGCTCCACAGTGGTCTCATCTGATGATCTTATTGTTGGGAATGCAATGTTTAGATGCATAGATTCAGGGCAGTTAGGTGACATTTGGGCACATTGTATTGAGAGGTGTCACTCTAAGACATTAAGGCAGCTGCTACACAATCATGGAAAGCTTGTGTCCTTATGTGAAGTTGAAGGTGTTCTGGCAGCATATGTTGCATTTGGGGATGGAGACATTAAACTTAGGGCTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGACGCAATGTGGAGGTCAGAATTATCCACTTGCCAGATGAAGGTGAAATTCAGATTAATCCACCGGGTGAAAACCAGGCAGAGTCAAAAATGGCAAGTGCGAAGGAACAAAGACGAGGTCATATGAATGGAACAGAGTCTTATTCTAATTTGCCTCCTGTACTGGATGGAAAACTTCAATCTGCCACTAGTTCATCAGATATTCGGGCTGAAGGAAATGTTACGAGAGAGAGGAGACAGGATAATCCAATGCAGCGAATTGAGTCCATCATTCGGGAACAAAGGTTGGAAACTGCCTGGTTACAGGCTGTTGAAAAAGGTTCCCCTGGATCATTGAGTCGTCTGAGACCTGAGAAGAATCAGGTCCTGCCGCAGGATGGCATCTACTGCGTAGACCCGAAGGAGCCCATGGATTCAACTAGATTTTCCTCTCATCAGCATTGGGAAGATGACCTCAATAATAGTTTGAAAGCATTGAGTATTAAAAATGGAAGGGTCCTGCAGAAGGATCAGATTAGTAAAAGGGCAGATCATTATCCTATGTCCCCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGATAATCTGGGATATGAGTCCAGCTCCAGACCAGGAGGTTGTGGATTTTTATGTTGGAACAAGTCCAAGACTAAAAGGGTAGTTAAGGTGAAAGGCACCCCAGTTAGAGCGCGTAAAGCTGGTTGTTTAACGTTGTTTGGTGAATGTGGTGGTAAGACAAAGAAAAAGGAGCGGAGAAGATAA 3753 0.4436 MSEMRVSDPSKLHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWKDSGSTRFTATANPNSQLDSALPPSINDKDKRVFLYNWKNYKSSSEKSGVPKYNVEEEEQEEEDEDGDGSSSLLGSFEDSLSDARNACDLKSDAGTRASIFLCGDANPVSKGTPAARRTTPMKKKSKKTNPHLDFLAAKHQHNRQTNLGRKLVSSNSKPLLEGRPSMPFFTRDDLVEHSDDTEDYCHSEDVRGVSGASPLLAKLKNKNWSRSSSKLLRRSRKEDSSYSYSTPALSTSSYNRYCGHRDPSTVGSWDGTTTSMNDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGACGRCYSPSLSDTLRRKGSSMLCGSQTFYPNHRRSFSASNKRRISSRSAQGVLPLLTNSGDVREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSTSCRSQEGLEIVALNGEGEDGSTPDNSWSFSQKYKPMFFGELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCVASDESNKPCGYCRECTDFISGKSSDLVEVDGTNKRGIDKARYLLKRLSIGSSSSSSRYTVFVFDECHLLPSKTWLGLLKFLEEPPQRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVIRLRKISTQESLDVETDALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDNAETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVVDVKPDDSHFGGRSLNESELERLKNALKLLSEAEKQLRTSSERTTWFTATLLQLGSIPSPDLTQSGTSRRQSSSKTTEDDPSSASRDVTSFKQKSDLSPASHLKAANGSSVHQKVISSRIDGFIKRPKPSNSPASSTVVSSDDLIVGNAMFRCIDSGQLGDIWAHCIERCHSKTLRQLLHNHGKLVSLCEVEGVLAAYVAFGDGDIKLRAERFLRSITNSMEMVLRRNVEVRIIHLPDEGEIQINPPGENQAESKMASAKEQRRGHMNGTESYSNLPPVLDGKLQSATSSSDIRAEGNVTRERRQDNPMQRIESIIREQRLETAWLQAVEKGSPGSLSRLRPEKNQVLPQDGIYCVDPKEPMDSTRFSSHQHWEDDLNNSLKALSIKNGRVLQKDQISKRADHYPMSPSLLHDNSLATISGKDNLGYESSSRPGGCGFLCWNKSKTKRVVKVKGTPVRARKAGCLTLFGECGGKTKKKERRR* 1251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4387 1250 MobiDBLite consensus disorder prediction 1036 1063 - -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 825 840 - -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 402 421 - -
Lja4g4387 1250 Gene3D - 650 711 - -
Lja4g4387 1250 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 472 822 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Lja4g4387 1250 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 695 IPR027417 -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 93 126 - -
Lja4g4387 1250 SUPERFAMILY post-AAA+ oligomerization domain-like 719 820 IPR008921 GO:0003677|GO:0006260
Lja4g4387 1250 MobiDBLite consensus disorder prediction 825 878 - -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 261 280 - -
Lja4g4387 1250 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 197 1189 - -
Lja4g4387 1250 Coils Coil 781 811 - -
Lja4g4387 1250 SMART AAA_5 504 659 IPR003593 -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 1010 1078 - -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 161 180 - -
Lja4g4387 1250 Pfam DNA polymerase III subunits gamma and tau domain III 702 822 IPR022754 GO:0003887
Lja4g4387 1250 Pfam DNA polymerase III, delta subunit 487 648 - -
Lja4g4387 1250 PANTHER PROTEIN STICHEL-LIKE 1 197 1189 - -
Lja4g4387 1250 Gene3D - 465 646 IPR027417 -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 32 73 - -
Lja4g4387 1250 Gene3D - 712 826 - -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 1064 1078 - -
Lja4g4387 1250 CDD HLD_clamp_pol_III_gamma_tau 648 711 IPR045085 -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 25 77 - -
Lja4g4387 1250 MobiDBLite consensus disorder prediction 851 878 - -
Lja4g4387 1250 CDD AAA 486 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4387 Lja-Chr4 77394084 77400277 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4387 469 763 Core DNA Replication Machinery Family AT1G21690 25.000 4.01e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4387 - - gmx:100814391 1816.97