Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4386 ATGGAAGCAATACCGCACCCAGTACCCAGAACTGTTGAAGAGGTTTTCAGCGACTTTAAGGGAAGACGTGCTGCTCTCATCAACGCCCTCACCACTGACGTTGACAAGTTTTACCAACAGTGCGACCCTGAGAAGGAGAATTTGTGCCTGTATGGATTTCCAAATGAAACATGGGAAGTCAATTTGCCCGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCTGCTCTAGGTATCAACTTTGCTAGGGATGGTATGCATGAGAAGGACTGGTTATCCCTCGTTGCAGTTCACAGTGACTCTTGGCTGCTTGCTGTTGCTTTCTATTTCGGTGCTCGCTTTGGATTTGGCAAGACCGAAAGGAAAAGGCTTTTTCAGATGATAAATGATATGCCGACTATCTTCGAGCTTGTGACAGGAGCTGCTAAGCAATCAAAGGACCAACTGGTTGCTAACAACAATGGTAGTAAGTTCAAACCAAGTGGAAAGTCCCGCCCATCTGAGCCTCAGGCCAAGGGAATGAAGATGTCTGCACCACCTAAAGAAGAGAATGAGAGTGGAGAAGAAGAAGATGATGATGAACAAGGTGCAACCTGTGGCGCTTGCGGTGAGAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGCGAGAGATGGTTCCATGGTAAATGTGTCAAAATTACTCCCGCTAAGGCTGAGCACATCAAGCAGTACAAGTGTCCAAGCTGTAGCAAGAGGGCAAGAGTTGGGTGA 756 0.4709 MEAIPHPVPRTVEEVFSDFKGRRAALINALTTDVDKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMHEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDMPTIFELVTGAAKQSKDQLVANNNGSKFKPSGKSRPSEPQAKGMKMSAPPKEENESGEEEDDDEQGATCGACGENYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSKRARVG* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4386 251 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Lja4g4386 251 PANTHER CPG BINDING PROTEIN 1 248 IPR045104 GO:0006355|GO:0042393
Lja4g4386 251 SMART PHD_3 197 245 IPR001965 -
Lja4g4386 251 MobiDBLite consensus disorder prediction 150 194 - -
Lja4g4386 251 Pfam PHD-finger 198 246 IPR019787 -
Lja4g4386 251 CDD PHD_AL_plant 198 247 IPR044104 -
Lja4g4386 251 SUPERFAMILY FYVE/PHD zinc finger 187 247 IPR011011 -
Lja4g4386 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 1 248 - -
Lja4g4386 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Lja4g4386 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Lja4g4386 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 246 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4386 Lja-Chr4 77386867 77389695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4386 1 250 Alfin-like Transcription Factor Family AT1G14510 77.600 5.41e-129 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lja4g4386 Alfin 8.9e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4386 - - gmx:100170698 455.292