Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4384 ATGAGCCATGAAGATGGAACCACCACAACAACCACATCCTCGGCAAACGAGAACTCTAACAAGCAATTATTAGATGATCACGAGAACGACACGGTGATGCCGGGGTTTCGATTCCACCCAACTGAAGAGGAGCTGGTGGAGTTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAATGTTGAGCTCATCACTTTCCTTGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCTTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGGAAGTATCGCAACGGCGATCGTCCCAACCGTGTGACTACTTCTGGGTATTGGAAGGCAACCGGAGCTGACAGGATGATTCGAACTGAAAACTTCAGGTCAATTGGGCTGAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGCATCCGAACCAGTTGGATTATGAATGAGTATCGCTTGCCTCAGCATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGGGTATACAAGAGAGCTGGAGTAGAAGATCATCCTTCCCTCCCTCGTTGTCTCCCAATTACCAAGCAGCCATCATCCTCAAGATCATCAAAACCAAGTGAAATAGCTCAGCATCAATATCTGCCACACAACATGGGCTTATTTCTTGGCCAATCAAATTCAAAACCAGTTCATGATGGACAAATAGTTGAGAATCATGAAACGGAGGGAATTAGCAGCACTGGTTCGGGTTCGGGTTCAGAACATCATGTAACAACAGCTCTTGGGCTCTCCAAGTACAATGCTTACCGTGCTGCGGTGGGTTCACTCAGCAACACAAATACAATAGGACTGCCAGCGGAGGAGGAAGGGTTGATGCTCCTGCCGCAGCACCACCAATCTAATAATCCAAAGCAACCACCAAATAACTCTTTAGTCCATGCATGTTTCCCTGCAAATGCTGTGCCTTCAAATAATAACAATAATAATGTAGTGATGATGGATGATCTGAACAGGCTAGTAAGTTATCAACCACAGTTCTTCAATGTTCAAAGTCATCCCAATCATCAATTATCTGCTTTACTGATGCAAACGGCGCCACCAATGTCTCTCAACTCACTACCAAATACACTTCCAACTACCTTCTCTGACCGACTGTGGGACTGGAATCCAATCCCTGAGGTAAACCAAGACCACCCAAACATCATGCCCTTCAAGTAA 1221 0.4603 MSHEDGTTTTTTSSANENSNKQLLDDHENDTVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPITKQPSSSRSSKPSEIAQHQYLPHNMGLFLGQSNSKPVHDGQIVENHETEGISSTGSGSGSEHHVTTALGLSKYNAYRAAVGSLSNTNTIGLPAEEEGLMLLPQHHQSNNPKQPPNNSLVHACFPANAVPSNNNNNNVVMMDDLNRLVSYQPQFFNVQSHPNHQLSALLMQTAPPMSLNSLPNTLPTTFSDRLWDWNPIPEVNQDHPNIMPFK* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4384 406 MobiDBLite consensus disorder prediction 193 208 - -
Lja4g4384 406 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 13 399 - -
Lja4g4384 406 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g4384 406 SUPERFAMILY NAC domain 32 178 IPR036093 GO:0003677|GO:0006355
Lja4g4384 406 MobiDBLite consensus disorder prediction 188 208 - -
Lja4g4384 406 Gene3D NAC domain 41 182 IPR036093 GO:0003677|GO:0006355
Lja4g4384 406 Pfam No apical meristem (NAM) protein 34 158 IPR003441 GO:0003677|GO:0006355
Lja4g4384 406 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 13 399 - -
Lja4g4384 406 ProSiteProfiles NAC domain profile. 32 179 IPR003441 GO:0003677|GO:0006355
Lja4g4384 406 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4384 Lja-Chr4 77372170 77374790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4384 32 406 NAC Transcription Factor Family AT2G02450 50.123 3.40e-116 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lja4g4384 NAM 4.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4384 - - gmx:100792622 484.952