Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4371 ATGGATCCTGTCAATGAGCCCAACAACCCTAATTTTGCTTCCAAGCAGCGTTTACGCTGGACACATGAGCTACATGGACGCTTTGTTGATGCTGTGGCACAACTTGGAGGCCCAGATCGTGCCACACCTAAAGGTGTCCTTAGAGTTATGGGTGTAGAAGGCTTAACAATATACCATGTCAAAAGCCATTTGCAGAAATATCGACTAGCAAAGTACATACATGACTCCTCATTAGATGGGGAAATAGCCGACAAGAAAGAAACAACAGATATGCTTTCCAATCAAGATGGTTCATCTGGGATGCAAATCACTGAAGCACTTAAGCTTCAAATGGAGGTGCAGAAGCGACTTCATGAGCAATTAGAGGTGCAAAGACAGCTGCAATTACGGATAGAAGCTCAGGGTAATTACTTGAAGAAGATTATTGAAGAGCAACAGCGTCTCAGTGGAGTTCTTTCAGAAAGACTTGACTCTGGGATTTCACCTCTGGTTCCAGGAGACATGTGCCAAAAAGATGGTAACAAGACTGACCCAACAACGCCTGCCCCATCCTCTGAGTGCCCCCTTCTGGAAAAAGCTGCTAAAGAGCGTGCACCAGCTGAGAGCCTGTCCATCGGTGAATCTTTTTCATCTCACCATGAACCAAGGACACCTGATTCCTGTTGCCATGGTGGTTCCTCTGTTTCCAGCCCTGAAGGGGAGATGTCAGCAAAGAAGCAACGGGTGAGCTTATTATAA 738 0.4607 MDPVNEPNNPNFASKQRLRWTHELHGRFVDAVAQLGGPDRATPKGVLRVMGVEGLTIYHVKSHLQKYRLAKYIHDSSLDGEIADKKETTDMLSNQDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGNYLKKIIEEQQRLSGVLSERLDSGISPLVPGDMCQKDGNKTDPTTPAPSSECPLLEKAAKERAPAESLSIGESFSSHHEPRTPDSCCHGGSSVSSPEGEMSAKKQRVSLL* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4371 245 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 10 243 - -
Lja4g4371 245 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 15 70 IPR006447 GO:0003677
Lja4g4371 245 MobiDBLite consensus disorder prediction 157 245 - -
Lja4g4371 245 MobiDBLite consensus disorder prediction 222 236 - -
Lja4g4371 245 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 10 243 IPR044848 GO:0003700
Lja4g4371 245 Coils Coil 104 124 - -
Lja4g4371 245 Pfam Myb-like DNA-binding domain 18 68 IPR001005 -
Lja4g4371 245 Gene3D - 14 73 - -
Lja4g4371 245 Pfam MYB-CC type transfactor, LHEQLE motif 101 147 IPR025756 -
Lja4g4371 245 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 72 IPR017930 -
Lja4g4371 245 SUPERFAMILY Homeodomain-like 14 69 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4371 Lja-Chr4 77281082 77285628 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4371 50 242 G2-like Transcription Factor Family AT2G01060 66.839 7.64e-77 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lja4g4371 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4371 - - lja:Lj0g3v0251039.1 480.715