Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4357 ATGAAACGCCCAACCGATGACGTGGCCGCAACCCTACCCAAGCCAAAGTTCCTCACTAAAGCTGAGCGCGAGGAATTGGCCCTAAAACGCCGTCAGGATCAAATCGCCGACCAGAGGCGCCGCCATCAACAGATCCTCTCCGATTCCAATCCCCCCTCCGCCGACCCCAACCGCCGCGACCGCGATAGGGATAGGGATCGCGACCGTGACCGTGACCGTGAAAGGGACCGCGAGAGGGACAGGGACAGAGACCGCGAACGGCGAAACCGAGAGAGGGAGCGCGACGAGGAGAACAAGGCCAGGGAGCGTGCTCGCTTGGAGAAACTGGCGGAGCGGGAGCGTGAGAAGGAGCTGGATGCGATCAAGGAGCAGTACCTCGGGTCGAAGAAGCCTAAGAAGCGTGTTATCAAGCCCAGTGAGAAGTTCCGCTTCTCCTTCGATTGGGAGAACACGGAGGACACCTCGCGTGACATGAATGCCCTCTACCAGAACCCTCACGAGGCTCAGCTTCTCTTCGGCCGTGGCTTCCGCGCCGGGATGGACCGCCGCGAGCAGAAGAAGCTTGCTGCCAAGAATGAGAAGGATATGCGGGATCAAATCCGGAAGAAGGACGGCATTGAGGAGAAGCCGGAGGAGGCGGACGCTCAGCGCCGGAAGGAGGAGGCTGCTGATATGTATGACACGTTTGACATGAGGGTGGACCGCCACTGGAGTGAGAAGAAGCTGGAGGAGATGACGGAGAGGGATTGGCGTATCTTCAGGGAGGACTTCAACATCTCCTACAAGGGTTCCAAGATCCCTCGCCCTATGCGGAGCTGGGATGAGAGTAGGTTGAGCCAGGAGCTCTTGAAGTCTGTTGAGAAGGCTGGTTACAAGACCCCTTCTCCTATTCAGATGGCTGCTATTCCACTTGGTCTTCAGCAGCGTGATGTCATTGGAGTTGCCGAAACCGGTTCTGGGAAAACCGCCGCTTTCGTTCTTCCCATGTTGAGTTACATCACCAGGCTTCCACCCATTAGTGAGGAGAATGAAGCTGAGGGTCCGTATGCTGTTGTCATGGCACCTACTCGTGAGCTTGCTCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTCGGCATCAAAGTGGTGTCTATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATAAGGCAGGGCTGTGAGATTGTGATTGCAACCCCTGGTCGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTGAATCAATGTAATTATGTTGTCCTTGATGAGGCTGACCGCATGATTGATATGGGGTTTGAGCCCCAGGTTATGGGGGTGCTGGATGCCATGCCTTCCAGTAATCTGAAACCTGAGAATGAAGATGAGGAGCTTGACGAGAAGAAGATTTACAGGACCACTTACATGTTTAGCGCCACCATGCCGCCTGCAGTGGAGAGGCTTGCCAGGAAGTATTTGAGGAACCCTGTTGTGGTGACCATAGGCACTGCTGGAAAAGCAACCGAGTTGATCAGCCAGTATGTGATGATGGTGAAGGAACCTGAGAAGTTTCATAAGCTCCAGAGGTTGCTTGATGAGCTCAATGACAAGACAGCAATTGTTTTTGTCAACACCAAGAAGAATGCTGATACGGTTGCCAAGAATTTGGATAAGGACGGATACCGTGTGACCACTTTACATGGAGGGAAATCGCAGGAGCAGAGGGAGATTAGTCTTGAGGGATTTAGAACCAAGAGATACAATGTTCTTGTTGCCACTGATGTTGCTGGACGTGGTATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACCCATCGTATTGGGCGTACTGGCCGTGCAGGGAAGACGGGTGTCGCCACTACATTCCTGACTCTTCATGACACTGATGTTTTTTATGACCTCAAACAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAATTGGCAAGGCATGAAGCTTCAAAATTCAAGCCGGGAAGTATTCCCGATAGACCACCTAGGCGAAATGATACTGTATTTGCGCATTAG 2076 0.5217 MKRPTDDVAATLPKPKFLTKAEREELALKRRQDQIADQRRRHQQILSDSNPPSADPNRRDRDRDRDRDRDRDRERDRERDRDRDRERRNRERERDEENKARERARLEKLAEREREKELDAIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNALYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMRDQIRKKDGIEEKPEEADAQRRKEEAADMYDTFDMRVDRHWSEKKLEEMTERDWRIFREDFNISYKGSKIPRPMRSWDESRLSQELLKSVEKAGYKTPSPIQMAAIPLGLQQRDVIGVAETGSGKTAAFVLPMLSYITRLPPISEENEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATELISQYVMMVKEPEKFHKLQRLLDELNDKTAIVFVNTKKNADTVAKNLDKDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDTDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4357 691 Coils Coil 83 119 - -
Lja4g4357 691 Gene3D - 502 689 IPR027417 -
Lja4g4357 691 Coils Coil 21 41 - -
Lja4g4357 691 MobiDBLite consensus disorder prediction 666 691 - -
Lja4g4357 691 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 271 299 IPR014014 GO:0003724
Lja4g4357 691 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 426 434 IPR000629 -
Lja4g4357 691 SMART ultradead3 290 512 IPR014001 -
Lja4g4357 691 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 64 684 - -
Lja4g4357 691 SMART helicmild6 548 629 IPR001650 -
Lja4g4357 691 CDD DEADc_DDX23 282 498 - -
Lja4g4357 691 PANTHER - 64 684 - -
Lja4g4357 691 MobiDBLite consensus disorder prediction 17 44 - -
Lja4g4357 691 MobiDBLite consensus disorder prediction 182 220 - -
Lja4g4357 691 MobiDBLite consensus disorder prediction 1 114 - -
Lja4g4357 691 CDD SF2_C_DEAD 509 638 - -
Lja4g4357 691 Pfam Helicase conserved C-terminal domain 521 629 IPR001650 -
Lja4g4357 691 Gene3D - 232 501 IPR027417 -
Lja4g4357 691 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 524 668 IPR001650 -
Lja4g4357 691 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 347 650 IPR027417 -
Lja4g4357 691 MobiDBLite consensus disorder prediction 54 114 - -
Lja4g4357 691 MobiDBLite consensus disorder prediction 659 691 - -
Lja4g4357 691 Pfam DEAD/DEAH box helicase 296 486 IPR011545 GO:0003676|GO:0005524
Lja4g4357 691 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 302 497 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4357 Lja-Chr4 77113961 77116574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4357 272 678 Eukaryotic Initiation Factors Gene Family AT3G13920 33.824 4.68e-63 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4357 K12858 - gmx:100792810 1157.13