Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4350 ATGGATACTGGAGGAGGCTTTCATGGCTACCGCAAGATCCCCAACTCTACCCCCTCTGGGTTGAAGCTATCAGTCTCGGAGGTGAACATGAGGCAGCAGCAGGTGATGGCAGCAGAGAACAACAACAACGTTGTCCAGTCAGCAACAGATGACAATGAATGCACGGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAACGTGATCAGGATCATGCGGAAGATCCTGCCGCCACATGCCAAAATCTCCGATGATGCAAAAGAAACAATTCAAGAATGCGTGTCTGAGTACATCAGCTTCATCACTGGAGAGGCCAATGAGCGTTGTCAGAGGGAGCAGCGCAAGACCATCACTGCAGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGGTTTGATGACTACATTGAGCCTCTCACCATGTACCTTCATAGGTACCGTGAGATGGAGGGTGACAGAACCTCCATGAGGGCTGAACCGCTTGGGAAGAGGACTGTGGAATATGGGACTATTGGGGTTGCAACTGCTTTTGTGCCACCACCACCATTTCATCACCATCACCATCATCATCACATTGGGCATCCAAATGGGTATTATGGTGCAGCCATGGCGGGGGGTTACATGAGGGATCATAATAATGCTGCAACACCAAATGCTGCTGCTGCAGGGTCATCTCAAGCTGCACTTGCTGAGCCGAATGGTCAATATAAATGA 711 0.5035 MDTGGGFHGYRKIPNSTPSGLKLSVSEVNMRQQQVMAAENNNNVVQSATDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRTSMRAEPLGKRTVEYGTIGVATAFVPPPPFHHHHHHHHIGHPNGYYGAAMAGGYMRDHNNAATPNAAAAGSSQAALAEPNGQYK* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4350 236 SUPERFAMILY Histone-fold 59 157 IPR009072 GO:0046982
Lja4g4350 236 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 126 IPR003958 -
Lja4g4350 236 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 215 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja4g4350 236 MobiDBLite consensus disorder prediction 216 236 - -
Lja4g4350 236 ProSitePatterns NF-YB/HAP3 subunit signature. 93 109 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lja4g4350 236 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 4 215 - -
Lja4g4350 236 Gene3D Histone, subunit A 49 166 IPR009072 GO:0046982
Lja4g4350 236 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Lja4g4350 236 PRINTS CCAAT-binding transcription factor subunit A signature 128 146 - -
Lja4g4350 236 PRINTS CCAAT-binding transcription factor subunit A signature 109 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4350 Lja-Chr4 77042737 77045458 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4350 5 197 CCAAT-HAP3 Transcription Factor Family AT5G47670 61.576 4.28e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja4g4350 CBFD_NFYB_HMF 7.1e-26 CL0012