Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g4350 | ATGGATACTGGAGGAGGCTTTCATGGCTACCGCAAGATCCCCAACTCTACCCCCTCTGGGTTGAAGCTATCAGTCTCGGAGGTGAACATGAGGCAGCAGCAGGTGATGGCAGCAGAGAACAACAACAACGTTGTCCAGTCAGCAACAGATGACAATGAATGCACGGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAACGTGATCAGGATCATGCGGAAGATCCTGCCGCCACATGCCAAAATCTCCGATGATGCAAAAGAAACAATTCAAGAATGCGTGTCTGAGTACATCAGCTTCATCACTGGAGAGGCCAATGAGCGTTGTCAGAGGGAGCAGCGCAAGACCATCACTGCAGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGGTTTGATGACTACATTGAGCCTCTCACCATGTACCTTCATAGGTACCGTGAGATGGAGGGTGACAGAACCTCCATGAGGGCTGAACCGCTTGGGAAGAGGACTGTGGAATATGGGACTATTGGGGTTGCAACTGCTTTTGTGCCACCACCACCATTTCATCACCATCACCATCATCATCACATTGGGCATCCAAATGGGTATTATGGTGCAGCCATGGCGGGGGGTTACATGAGGGATCATAATAATGCTGCAACACCAAATGCTGCTGCTGCAGGGTCATCTCAAGCTGCACTTGCTGAGCCGAATGGTCAATATAAATGA | 711 | 0.5035 | MDTGGGFHGYRKIPNSTPSGLKLSVSEVNMRQQQVMAAENNNNVVQSATDDNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYREMEGDRTSMRAEPLGKRTVEYGTIGVATAFVPPPPFHHHHHHHHIGHPNGYYGAAMAGGYMRDHNNAATPNAAAAGSSQAALAEPNGQYK* | 237 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g4350 | 236 | SUPERFAMILY | Histone-fold | 59 | 157 | IPR009072 | GO:0046982 | |
Lja4g4350 | 236 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 62 | 126 | IPR003958 | - | |
Lja4g4350 | 236 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 4 | 215 | IPR027113 | GO:0001228|GO:0006355|GO:0016602 | |
Lja4g4350 | 236 | MobiDBLite | consensus disorder prediction | 216 | 236 | - | - | |
Lja4g4350 | 236 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 93 | 109 | IPR003956 | GO:0005634|GO:0006355|GO:0043565 | |
Lja4g4350 | 236 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 | 4 | 215 | - | - | |
Lja4g4350 | 236 | Gene3D | Histone, subunit A | 49 | 166 | IPR009072 | GO:0046982 | |
Lja4g4350 | 236 | PRINTS | CCAAT-binding transcription factor subunit A signature | 90 | 108 | - | - | |
Lja4g4350 | 236 | PRINTS | CCAAT-binding transcription factor subunit A signature | 128 | 146 | - | - | |
Lja4g4350 | 236 | PRINTS | CCAAT-binding transcription factor subunit A signature | 109 | 127 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g4350 | Lja-Chr4 | 77042737 | 77045458 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g4350 | 5 | 197 | CCAAT-HAP3 Transcription Factor Family | AT5G47670 | 61.576 | 4.28e-76 | 228 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YB | Lja4g4350 | CBFD_NFYB_HMF | 7.1e-26 | CL0012 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lja4g4350 | K08065 | - | rcu:8276453 | 297.745 |