Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4348 ATGGCTGAATCTGACAAGGAAATAGGAGGTAAGAATGAATTGACAAGTCCAAATGGGTGCAGAGAGCTGGAGAGGCTCCTTCCAATAGCGAACGTGAGCAGGATCATGAAGAAGGCGTTACCAGGCAACGCCAAGATCTCAAAGGAAGCCAAGGAAACGATGCAAGAGTGTTTATCTGAGTTCATCAGCTTCATCACAGCAGAGGCGTCTGATAAGTGCCAGAACGAGAAGAGGAAGACAATCAACGGTGATGATCTTGTGTGGGCCATGACCACTCTGGGTTTTGAAGACTACGTGCAGGCTCTCAAGGGTTACCTTCACAAGTACAGGGACATGGAGGGAGAGAAGACTAATTATTCTTTCATTGGGAGGCAGCAGCAGAATCAGCAGGGTGATGATGATGCTGTTGGTAGTGGGGTGTCAATGCCATCATCATCCACTAGCTATCACCATCAAGGGGTTATGTATGCATCTGGAAATGTTTGGAAGAGCTAG 495 0.4747 MAESDKEIGGKNELTSPNGCRELERLLPIANVSRIMKKALPGNAKISKEAKETMQECLSEFISFITAEASDKCQNEKRKTINGDDLVWAMTTLGFEDYVQALKGYLHKYRDMEGEKTNYSFIGRQQQNQQGDDDAVGSGVSMPSSSTSYHHQGVMYASGNVWKS* 165
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4348 164 SUPERFAMILY Histone-fold 24 128 IPR009072 GO:0046982
Lja4g4348 164 Gene3D Histone, subunit A 16 138 IPR009072 GO:0046982
Lja4g4348 164 PRINTS CCAAT-binding transcription factor subunit A signature 73 91 - -
Lja4g4348 164 PRINTS CCAAT-binding transcription factor subunit A signature 54 72 - -
Lja4g4348 164 PRINTS CCAAT-binding transcription factor subunit A signature 92 110 - -
Lja4g4348 164 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 26 90 IPR003958 -
Lja4g4348 164 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lja4g4348 164 MobiDBLite consensus disorder prediction 126 149 - -
Lja4g4348 164 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3 1 155 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja4g4348 Lja-Chr4 77024736 77025382 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4348 1 125 CCAAT-HAP3 Transcription Factor Family AT4G14540 72.000 3.73e-59 179
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lja4g4348 CBFD_NFYB_HMF 4.4e-27 CL0012
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4348 4 77024736 77025382 Lja6g2538 6 54187107 54188752 PCT