Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4340 ATGGGCAGTAGTGATGATGAAGCTGAAAAATCATTACTTTCAGAATCAAGAGATCATCCTCATCTTCATGTCCAGAGAAGACGACCCCGGCGAGGTAGTGTTTCAGAGACAGAGATCAATCTCCTAGAACAAAATGTAGTCCAAAACCCTTCACACTCTCGTACAGCTGCAGAACCACAAGCAGAATTTGATTTCAAGCCAGTGTTTTTGTGGTTAGCTACCTATCTTGGTGCAGGTACCCTATGTTTCTTTCTCACTAGTTATCAGATCACAGGTATAAAAACCAATGGATTTCTTGATGCTCTTTACTTTTGTGTTGTGACAATGACCACTGTTGGATATGGAGATCTTGTGCCGAATAGCCCATTGGCGAAACTTCTTGCCTGCATTTATGTCTTCACAGGCATGGCTCTTGTTGGGTTAATTCTAAGCAAAGCAGCTGATTACATTGTTGAGAAGCAAGAACTGATACTAGTAAGAGCTATGTGCAAAGGTGGAAAACTTAGACCAGAAGAGCTTTTCAAAGAGGTTGAAACTAACAAAAGCAAGTACAAATTTGTGCTTGCAGCAGCAATTTTTTGTGTGCTCATGATTGCAGGAACTGCTTTTCTGTATTTTGTTGAAAATCTAGATTTTGTGGATGCACTCTATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCAACTACTATTGGTCGCGTTTTTGCTATGTTCTGGATATTGAGCAGCACTATTTGCTTAGCACAGTCTTTTGCCTATCTTGCTGAGCTATATACTGAAAATAGACAAAGATCATTGGCGAAATTGGTTCTTACGCGAAAATTGTCACTCCTTGATCTTGAGACAGCGGATCTTGATCAAGACAAAGCTGTTAGTGCTGCAGAGTTTGTTGTGTACAAGTTGAAGGAAATGGGAAAGATCAATCAAGAAGATATTTCAGCTGTGATGGAGATTTTTAGAAAACTAGATTGTGATAAATCAGGAACTTTGACAGAAGCTGATCTTAGATAA 1029 0.3946 MGSSDDEAEKSLLSESRDHPHLHVQRRRPRRGSVSETEINLLEQNVVQNPSHSRTAAEPQAEFDFKPVFLWLATYLGAGTLCFFLTSYQITGIKTNGFLDALYFCVVTMTTVGYGDLVPNSPLAKLLACIYVFTGMALVGLILSKAADYIVEKQELILVRAMCKGGKLRPEELFKEVETNKSKYKFVLAAAIFCVLMIAGTAFLYFVENLDFVDALYCVCSTVTTLGYGDKSFSTTIGRVFAMFWILSSTICLAQSFAYLAELYTENRQRSLAKLVLTRKLSLLDLETADLDQDKAVSAAEFVVYKLKEMGKINQEDISAVMEIFRKLDCDKSGTLTEADLR* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4340 342 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 16 340 - -
Lja4g4340 342 MobiDBLite consensus disorder prediction 1 35 - -
Lja4g4340 342 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 16 340 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja4g4340 342 SUPERFAMILY EF-hand 286 342 IPR011992 -
Lja4g4340 342 ProSitePatterns EF-hand calcium-binding domain. 329 341 IPR018247 -
Lja4g4340 342 Gene3D - 288 342 - -
Lja4g4340 342 Gene3D - 169 287 - -
Lja4g4340 342 Gene3D - 50 162 - -
Lja4g4340 342 SUPERFAMILY Voltage-gated potassium channels 65 152 - -
Lja4g4340 342 Pfam Ion channel 73 151 IPR013099 -
Lja4g4340 342 Pfam Ion channel 193 264 IPR013099 -
Lja4g4340 342 ProSiteProfiles EF-hand calcium-binding domain profile. 316 342 IPR002048 GO:0005509
Lja4g4340 342 SUPERFAMILY Voltage-gated potassium channels 177 280 - -
Lja4g4340 342 MobiDBLite consensus disorder prediction 1 22 - -
Lja4g4340 342 PRINTS Two pore domain K+ channel signature 224 233 IPR003280 GO:0005267|GO:0016020|GO:0071805
Lja4g4340 342 PRINTS Two pore domain K+ channel signature 107 135 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4340 Lja-Chr4 76960333 76961937 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4340 50 341 Ion Channels AT5G55630 57.534 8.18e-118 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4340 K05389 - gmx:100799492 520.005