Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4328 ATGCAAACATCTCAGAAATACCCGAGTTCAGCTGGTGTCCATTTCTATCAGCAGCCTCTGCAAGGCATTTACCAAATATCACAAAGCGATCGATGTGATAGCAGCAGCCAGGGAACTAATATTTCTTTTGAAGCATGCAAAGAGCAATTCTTTACCCTGGAATCATGCCCAGAAATCACTGGTTTCATGAATTGTGACTCCCCTTCATATGGCAGTGTATCCTCTAACCGTAGTCCATTATCTCCACAAGATTCTCAGTCAAGCCATTCAGATCACCACCGGTCACCTGAAAATACCTATGGATCACCAATAAGCAGCTTGTCCAGTGTTGATGATGGGAATGAGTTGAAGCACAAACTTAGAGAACTGGAGATTTCATTGTTGGGACTTGATGAATCAGATATTGTTGACAGTTGTGACAACTGGGGTAGTAGCCTTCGCGGAGCACCACCACCATCAGCCAAATATGATTGGAATCTCATTGCAGAAAATATTCCAAAGCTTGACTTGAAACAAGTCCTCATTCTATGTGCACAAGCAGTGTCGGATGAGGATATTCCAACAGCAAGAGGGTGGATAGATAATATATTGGGGAAGATGGTATCAGTTGCTGGAGATCCATCTCAGAGATTAGGTGCTTACTTGTTGGAGGGGCTTCGAGCAAGGTTGGAATTGTCAGGGAGTCTGATCTACAAAGCCTTGAAATGTGAACAACCCACAGGCAAAGAACTAATGAGTTACATGCACATCCTGTATCAGATTTGTCCATATTGGAAGTTTGCTTACATATCTGCAAATGCTGCCATTGCAGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTCCAGATTGCGCAGGGCACACAGTGGCATTTACTTATACAAGCTCTTGCACACAGGCCTGGTGGACCTCCTTTCATTCGGATTACTGGTGTTGATGATTCCCAATCTTTTCATGCTCGGGGGGGAGGGCTCGAGATTGTTGGAGAAAGGCTTTCAGATTTCGCCAGGTCTTACGGGGTGCCATTTGAGTTCCACAGTGCTGCTATGTCTGGCTGTGAGGTTGAACGTGAAAATCTCGGAGTTCGACCCGGGGAAGCACTCGCTGTGAACTTTCCTTATGTTCTGCACCACATGCCAGATGAGAGTGTGAGCACGGAGAATCATAGAGACAGGTTGTTGAGATTGGTTAAGAGCTTGTCTCCAAAGGTTGTTACCCTTGCTGAGCAAGAATCCAACACCAACACTTCACCTTTCTTTAACAGGTTCATGGAGACACTGGAGTACTACACAGCTATGTTTGAATCAATAGATGTGGCTTGCCCCAGAGATGATAAGAAGCGGATCAGCGCAGAGCAGCACTGCGTGGCACGGGACATTGTCAACATGGTAGCCTGTGAGGGGGCTGAGAGGGTGGAAAGGCATGAGCTTTTTGGGAAGTGGAAGTTAAGATTTTCCATGGCTGGATTTAAACAATGGCCGTTGAGTTCTTCAGTTATGACTGCTACCCAGAATCTTTTGAGGGACTTCAATCATAATTATAGGCTTGAACAGAGAGATGGTGCTCTTTGCCTTGGTTGGATGAAGAGAGCTCTGGTTACCTCTTCTGCTTGGAGGTGA 1626 0.4533 MQTSQKYPSSAGVHFYQQPLQGIYQISQSDRCDSSSQGTNISFEACKEQFFTLESCPEITGFMNCDSPSYGSVSSNRSPLSPQDSQSSHSDHHRSPENTYGSPISSLSSVDDGNELKHKLRELEISLLGLDESDIVDSCDNWGSSLRGAPPPSAKYDWNLIAENIPKLDLKQVLILCAQAVSDEDIPTARGWIDNILGKMVSVAGDPSQRLGAYLLEGLRARLELSGSLIYKALKCEQPTGKELMSYMHILYQICPYWKFAYISANAAIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPFIRITGVDDSQSFHARGGGLEIVGERLSDFARSYGVPFEFHSAAMSGCEVERENLGVRPGEALAVNFPYVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLAEQESNTNTSPFFNRFMETLEYYTAMFESIDVACPRDDKKRISAEQHCVARDIVNMVACEGAERVERHELFGKWKLRFSMAGFKQWPLSSSVMTATQNLLRDFNHNYRLEQRDGALCLGWMKRALVTSSAWR* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4328 541 ProSiteProfiles GRAS family profile. 161 541 IPR005202 -
Lja4g4328 541 MobiDBLite consensus disorder prediction 97 111 - -
Lja4g4328 541 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 540 IPR005202 -
Lja4g4328 541 MobiDBLite consensus disorder prediction 73 111 - -
Lja4g4328 541 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 15 540 - -
Lja4g4328 541 Pfam GRAS domain family 170 541 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4328 Lja-Chr4 76853546 76856350 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4328 1 541 GRAS Transcription Factor Family AT4G17230 59.191 0.0 630
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lja4g4328 GRAS 2.6e-129 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4328 - - gmx:100776109 838.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4328 4 76853546 76856350 Lja6g2513 6 54040794 54044352 PCT