Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4321 ATGTCTGTCATCGAAACCCCCAGCGTCCACCACCACCGGAAGCGCAAACACGACGAAATCGATGACGACGAAGGCGGCGTCTCCGACATAGACCCTATCAGGATGAAGAAGGACGACGCGGCCAAGGCCGTTTACTCCGCCGTCCACCACCGATCAATCATGCTACAGTTCTTCGTTCGCATGATGGGCAACGGCAACACCATCGTTATGCAAGCGCATCCTGATGATACAGTCCAATCGATTCACGAGCGTATCCAAGCCTTGAAGGGTATCCCTGTTTTCGAACAGAGGCTAATCTACAACGGGAAGCAGCTTCAGTCGGAGCAGACTCTCGCCGAATGTTCCATCGGAAAAGACGCCAGTCTTCAACTCGTTGGCCGCATGCGCAGCACCGGCCACCCACATGCCTGGCAGGTCATCAACGACATGGTCTCCCTTGTTATACGACTCTGCCACAACGAACCTGTTCACGACGCTAACAAGACCATCAAGGGTCTCATCACCAGCTACCTCAACTTGTCTCCGAAGAATGACAACGATTCTGCTTCTGGGTATTTTCAGATTTTCATGTCCGCCACCGCTGTGCTTGTCTCGCTCTATCTATCTCCCTACACGGGTAATAAAGACTGTGCTGATTCTTCTATTAGGCATTTTTTGACCACTTGCAAGACCACCGTTTCACCGCCCTTGCACACCCAGTGTGCGCGTGTGGTCTTGGATTTCTGTACATTGCTCAAGAAGAGGGTGAGTTCTGAGGACCCTTTGTATGGCTTCTGTCGTAGTACTTTTGGGTCATTGTTGGAAACTGCTAGGGTTTATTGTGCTGATTCTGAGGGTGACAATGTTAAAGGGTCCATTTTGGTTCAAGAGATATTCCCTTTTGTTAGTGAGCTTGCTAAGAGCTTGTTGGTGGATTTGGATTTGAGCATAGACTCCCCCTCCAATGCGGGGACTTTCTTGATCAATGTCGCGGATTTTACTGCCTTCTTGGTCCCTTTGAGGGCCAGGATCATGGAGCAACAAGCTCTCCGTGGTTCTATGCCTACCCAGAAGCGCCATAAGGAGGCGTTGCTCGTGGAAGAGATTGAAGGCCTTCATCTCTTGTACAATGATTTATTGAACAAAACTGATCAGTGCCTTCAAAAATTGGAGCAGACATGGGCTGGCCAGGGAATGATGCAAGGGGAGGATATTTATCCCGCGTGGTCTCATTATCTTTCCATTTTGAAGGAGTTGTATCTAATATCTAAGCTTTATGATGGCGCTGAAGAAAAGCTCTGGAAGGTTTTGACGCGTCAGAGAAGCGTCGTGTGCCTGCTGATAGTTCGATATGCAAAGAGGACTGATGAGCATCAGTGGATTCTCGAGCACAAGTGTGTCACAAATTTTGAGTCTAGGAGGCATTTGGCAATGATGATGTTCCCAGAGGTAAAAGAAGACTATGAGGAATTGCACGAGATGCTTATCGACAGGTCTCAGTTATTGAGTGAATCTTTTGAGTACATAGCACGAGCTGATACTGCATCGCTGCACGCTGGCCTATTCATGGAATTCAAAAACGAGGAAGCCACTGGCCCAGGTGTACTGAGGGAATGGTTTCTTTTGGTATGCCAAGCATTGTTCAACCCACAAAATGCTCTTTTTGTAGCATGCCCGAATGATCGAAGGAGATTTTACCCCAACCATGCTTCTAAGGTACATCCTCTGCACCTTGAGTACTTTGGCTTCTCTGGTCGAGTTATTGCATTAGCTTTGATGCATAAAGTGCAAGTGGGTATTGTTCTTGATCGTGTATTTTTCTTGCAATTGGCTGGGAAGCATATTACTTTAGAAGATGTGAAGGATGCAGATCCTTTCCTGTATAGTAGCTGCAAGCAAATATTGGAGATGGATTCTGACTTCATTGATTCAGATGCATTAGGACTAACTTTTGTTAGAGAGGTGGAGGAGTTAGGAGACACAAAAGTGGTTGAGCTCTGCCCTGGTGGGAAAAACCTTATAGTTAATAGCAAGAACAGGGAGAAGTATATTGACCTTCTTATAAAGGATCGTTTTGTGACATCAATATCTGAGCAGGTGTCACATTTTTCCAAAGGTTTTACTGATATTCTTTCAAGCTCAAAGTTCCAGCAGTTCTTCTTTCAAAGTTTAGAGCTTGAAGATCTTGATTGGATGCTACATGGGAGTGAAGATACCATTTCTGTGGAAGATTGGAAAGCACACACCGAGTATAATGGCTATAAGGAGACAGATATCCAGATAACTTGGTTTTGGGAGATTGTGGGGAGAATGACAGCGGAGCAAAGGAAGGTTCTTCTATTCTTTTGGACATCCGTGAAATATTTACCAGTTGAAGGTTTCTGCGGTTTGGCTTCCCGTCTCTACATATACAAATCCCCTGAACCTGAAGATCGCCTTCCTTCATCTCACACATGCTTTTATAGGATGTGTTTCCCAGCTTATTCATCTATGACTGTCATGCAAGAGCGTCTTGAAGTTATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2541 0.4589 MSVIETPSVHHHRKRKHDEIDDDEGGVSDIDPIRMKKDDAAKAVYSAVHHRSIMLQFFVRMMGNGNTIVMQAHPDDTVQSIHERIQALKGIPVFEQRLIYNGKQLQSEQTLAECSIGKDASLQLVGRMRSTGHPHAWQVINDMVSLVIRLCHNEPVHDANKTIKGLITSYLNLSPKNDNDSASGYFQIFMSATAVLVSLYLSPYTGNKDCADSSIRHFLTTCKTTVSPPLHTQCARVVLDFCTLLKKRVSSEDPLYGFCRSTFGSLLETARVYCADSEGDNVKGSILVQEIFPFVSELAKSLLVDLDLSIDSPSNAGTFLINVADFTAFLVPLRARIMEQQALRGSMPTQKRHKEALLVEEIEGLHLLYNDLLNKTDQCLQKLEQTWAGQGMMQGEDIYPAWSHYLSILKELYLISKLYDGAEEKLWKVLTRQRSVVCLLIVRYAKRTDEHQWILEHKCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLSESFEYIARADTASLHAGLFMEFKNEEATGPGVLREWFLLVCQALFNPQNALFVACPNDRRRFYPNHASKVHPLHLEYFGFSGRVIALALMHKVQVGIVLDRVFFLQLAGKHITLEDVKDADPFLYSSCKQILEMDSDFIDSDALGLTFVREVEELGDTKVVELCPGGKNLIVNSKNREKYIDLLIKDRFVTSISEQVSHFSKGFTDILSSSKFQQFFFQSLELEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQITWFWEIVGRMTAEQRKVLLFFWTSVKYLPVEGFCGLASRLYIYKSPEPEDRLPSSHTCFYRMCFPAYSSMTVMQERLEVITQEHIGCSFGTW* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4321 846 ProSiteProfiles Ubiquitin domain profile. 55 131 IPR000626 GO:0005515
Lja4g4321 846 Pfam Ubiquitin family 58 129 IPR000626 GO:0005515
Lja4g4321 846 Pfam HECT-domain (ubiquitin-transferase) 535 838 IPR000569 GO:0004842
Lja4g4321 846 Gene3D Hect, E3 ligase catalytic domain 729 845 - -
Lja4g4321 846 SUPERFAMILY Ubiquitin-like 56 143 IPR029071 -
Lja4g4321 846 SMART hect_3 504 844 IPR000569 GO:0004842
Lja4g4321 846 Gene3D Hect, E3 ligase catalytic domain 606 688 - -
Lja4g4321 846 ProSiteProfiles HECT domain profile. 506 846 IPR000569 GO:0004842
Lja4g4321 846 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 41 844 - -
Lja4g4321 846 Gene3D - 47 143 - -
Lja4g4321 846 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 41 844 - -
Lja4g4321 846 PRINTS Ubiquitin signature 87 107 IPR019956 -
Lja4g4321 846 PRINTS Ubiquitin signature 108 129 IPR019956 -
Lja4g4321 846 PRINTS Ubiquitin signature 66 86 IPR019956 -
Lja4g4321 846 MobiDBLite consensus disorder prediction 12 29 - -
Lja4g4321 846 Gene3D Hect, E3 ligase catalytic domains 488 719 - -
Lja4g4321 846 SUPERFAMILY Hect, E3 ligase catalytic domain 481 832 IPR035983 GO:0004842
Lja4g4321 846 SMART ubq_7 55 127 IPR000626 GO:0005515
Lja4g4321 846 CDD HECTc 485 844 IPR000569 GO:0004842
Lja4g4321 846 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4321 Lja-Chr4 76760438 76766650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4321 55 129 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.333 7.19e-13 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4321 - - gmx:100796470 1303.12