Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4306 ATGGCGGGTTCATGTTTCCATGCACTTCGCTTACGAAGAACGAAGAGCAAGCCTTTTCCTTCTTCTTCTCCTTCTTCATCCAAGGCCCGGTGGAATTCTGATGCAGAGAACATGGAGAGGAAGAGATTTGACAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCATCAAATGAGGATCAGGAGGAATGGACAGCTGATCTTTCACAGCTTTTCATTGGTAACAAGTTTGCATCCGGGGCTCACAGTCGGATTTACCGTGGAATTTACAAGCAGCGAGCTGTTGCGGTGAAAATGGTGAGGATTCCAAACCAGAATGAGGAGAGAAGAGGCTTGCTTGAAAGCCAATTCAAATCTGAAGTGGCTTTGCTTTCACGTCTCTTTCATCCTAACATAGTCCAGTTCATTGCAGCCTGTAAAAAACCTCCAGTATATTGTATCATTACAGAATACATGTCACAAGGAACTCTGAGGATGTATTTGAACAAGAAAGAGCCATACTCTCTATCAACAGAAACTATACTAAGGTTAGCTCTTGACATATCTAGGGGCATGGAGTATCTTCACTCGCAAGGTGTGATTCACAGGGACCTCAAGTCAAATAACTTGCTTCTCAACGATGAGATGAGAGTTAAGGTGGCAGATTTTGGAACATCCTGTCTCGAAACGCGGTGCCGGGAGACCAAAGGAAACATGGGAACATATCGTTGGATGGCACCAGAGATGATTAAGGAAAAGCCTTACACTCGGAAAGTTGATGTCTATAGCTTTGGAATTGTGCTTTGGGAACTCACAACTGCATTACTTCCCTTCCAAGGAATGACCCCAGTGCAAGCTGCTTTTGCTGTTTCTGAGAAGAATGAAAGACCTCCACTGCCTGCAAGTTGTCAACCTGCACTTGCTCATCTGATAAAGCGTTGTTGGTCAGCAAACCCTTCGAAGCGACCAGATTTCAGTGACATTGTGTGTACTCTCGAGAAGTACGATGAGTGTGTCAAGGAAGGTCTTCCTCTCACTCACCATTCAAGCCTAGCAGTCAGCGGAAACGCCATTATTGAATGCATAAAAAGCTGCTTCTCAATGAACTCCTCCTCCATACCTGTATATGCTTGA 1134 0.448 MAGSCFHALRLRRTKSKPFPSSSPSSSKARWNSDAENMERKRFDSLESWSMILDSENVETWEASNEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPNQNEERRGLLESQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVSEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSSLAVSGNAIIECIKSCFSMNSSSIPVYA* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4306 377 SMART serkin_6 78 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4306 377 MobiDBLite consensus disorder prediction 15 35 - -
Lja4g4306 377 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 10 357 - -
Lja4g4306 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Lja4g4306 377 SUPERFAMILY Protein kinase-like (PK-like) 56 332 IPR011009 -
Lja4g4306 377 Gene3D Phosphorylase Kinase; domain 1 67 160 - -
Lja4g4306 377 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 10 357 - -
Lja4g4306 377 PRINTS Tyrosine kinase catalytic domain signature 194 212 IPR001245 GO:0004672|GO:0006468
Lja4g4306 377 PRINTS Tyrosine kinase catalytic domain signature 240 250 IPR001245 GO:0004672|GO:0006468
Lja4g4306 377 PRINTS Tyrosine kinase catalytic domain signature 259 281 IPR001245 GO:0004672|GO:0006468
Lja4g4306 377 PRINTS Tyrosine kinase catalytic domain signature 156 169 IPR001245 GO:0004672|GO:0006468
Lja4g4306 377 PRINTS Tyrosine kinase catalytic domain signature 303 325 IPR001245 GO:0004672|GO:0006468
Lja4g4306 377 Pfam Protein tyrosine and serine/threonine kinase 80 331 IPR001245 GO:0004672|GO:0006468
Lja4g4306 377 ProSiteProfiles Protein kinase domain profile. 78 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g4306 377 MobiDBLite consensus disorder prediction 16 32 - -
Lja4g4306 377 CDD STKc_MAP3K-like 85 329 - -
Lja4g4306 377 Gene3D Transferase(Phosphotransferase) domain 1 161 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4306 Lja-Chr4 76660437 76664281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4306 1 367 MAP Kinase Kinase Kinase AT1G62400 82.667 0.0 638
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lja4g4306 PK_Tyr_Ser-Thr 9.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4306 - - gmx:100803225 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4306 4 76660437 76664281 Lja6g2478 6 53690366 53694716 PCT