Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4302 ATGAAGCTCGACACCTCCAACGGCCAGATTACCCTCTCCTCCGCCGACGCCGCCGCCACCAACGACGACGCCGAGGAGATATTCGTGCCGCCGCTCAACTTCGCCATGGTCGACAACGGCATTTTTAGGTCTGGCTTTCCCGACTCTGCCAATTACGGATTCTTGAAATCCCTCCGTCTCCGTACCGTAATATGTTTGTGCCCTGAACCGTATCCAGAAGCTACTGGGGAGTTTCTCAAGGCCAACGGAATAAGGCTTTATCAATTCGGGATCGATGGCTGCAAGGAACCCTTTGTTAACATCCCAAACGATACAATTCGTGAAGCTCTGAAAGTAGCCCTCGATGTTAGGAACCACCCCCTGCTGATTCATTGTAAACGAGGGAAGCACCGCACCGGTTGTCTTGTGGGATGCATAAGAAGGTTGCAGAGATGGTGTCTATCATCTGTTTTTGATGAGTACCAAAGGTTTGCAGGTGCCAAAGCCAGAGTGTCAGACCAGAGGTTCATCGAGTTGTTTGATATTTCATCTTTGAAGAACCACCCTCTGTCATTTTCATCCTCTAAAAGATAG 573 0.4974 MKLDTSNGQITLSSADAAATNDDAEEIFVPPLNFAMVDNGIFRSGFPDSANYGFLKSLRLRTVICLCPEPYPEATGEFLKANGIRLYQFGIDGCKEPFVNIPNDTIREALKVALDVRNHPLLIHCKRGKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDISSLKNHPLSFSSSKR* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4302 190 ProSitePatterns Tyrosine specific protein phosphatases active site. 123 133 IPR016130 GO:0016311|GO:0016791
Lja4g4302 190 PRINTS Plant and fungal dual specificity phosphatase signature 101 115 IPR020428 GO:0016791
Lja4g4302 190 PRINTS Plant and fungal dual specificity phosphatase signature 65 78 IPR020428 GO:0016791
Lja4g4302 190 PRINTS Plant and fungal dual specificity phosphatase signature 28 45 IPR020428 GO:0016791
Lja4g4302 190 PRINTS Plant and fungal dual specificity phosphatase signature 84 98 IPR020428 GO:0016791
Lja4g4302 190 ProSiteProfiles Dual specificity protein phosphatase domain profile. 33 187 IPR020422 GO:0006470|GO:0008138
Lja4g4302 190 Gene3D Protein tyrosine phosphatase superfamily 27 177 IPR029021 -
Lja4g4302 190 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 28 175 IPR029021 -
Lja4g4302 190 Pfam Tyrosine phosphatase family 29 182 IPR004861 -
Lja4g4302 190 PANTHER TYROSINE-PROTEIN PHOSPHATASE 17 188 - -
Lja4g4302 190 PANTHER - 17 188 - -
Lja4g4302 190 CDD PFA-DSP_Siw14 28 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4302 Lja-Chr4 76638144 76641067 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4302 1 190 Protein tyrosine phosphatase (PTP) family AT4G03960 65.969 4.96e-97 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4302 K18045 - gmx:100785520 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4302 4 76638144 76641067 Lja4g4302 4 76638144 76641067 ECH