Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4301 ATGGGCAAATCAGGGGGTAGGAAGAAGAAGGGTGTTTCCGTTGCTCCTGTTGATAGTTCAGGTTCAGCTCCAACTGCAAACGGTGGAGTAGAGTTGGATTCCTCAATTTTTTTGAAGAAAGCTCATGAGCTGAAAGAGGAAGGGAACAAGAGATATGAGAACAAGGACTATGCTGCTGCTCTTGAACAGTATGATAATGCTCTTAGACTAATCCCCAAAACGCATCCTGACAGAGCGGTTTTTCACAGCAATAAGGCCGCGTGTTTGATGCAAGTGAAGCCTATTGATTATGAAGCTGTGATTGCTGAGTGCACCATGGCGCTTCAGGTTCAGCCGCGGTTTGTTCGGGCCCTGCTACGGAGGGCTCGGGCGTTTGAGGCTGTCGGCAGCTATGAACAGGCTGTGCAAGATGTGCAGTTGTTGTTGGTAGCTGACCCTAATCACAGGGATGCGCTGGAGATTGCACAAAGATTGAGGACTGCATTGGGGCCTCGCCTGGAAGCCCAGCAGGATCTCCACAGCCGCCCCTCCCCGGCTGCTCTCGGTGCTTCTGCGGTTCGTGGTGCCCCTATTGCTGGATTGGGGCCGTGTTTGCCGGCCCGACCGGGACCTAAGAAGGGGGCTAATGCAGCAGTTGGGTCTGTTGTCTCGCCTAATAGCAAGATAGACAAGGCACAACCAGTTTTACCAACTGAGAATGGTCCTGAGAGCAAGTCCCAGATGCCGAAAGTTGCGTTGAAGCCTTTAACTGGTTCTGCAAAGCTGCCCAACTCGAAAGTTGAAAACCAGAAGGAACTTTCGATTCATTCATCAACTGTGCAGGGGCAGCGCTCAGAGGTCATGGTTCGGTTTAGACCGCTGAAGCTTGTTTATGATCATGACATTAGGCTAGCCCAGATGCCTGTCAACTGCAGTTTTAGAGTACTAAGAGACATAGTCAGCAAAAGATTTCCTTCATCAAATTCTGTTCTGATCAAGTACAAAGATTGTGATGGTGATTTGGTTACTATAACGTCTACTGATGAACTCCGGTTGGCAGAGTCTACTGTTGATAGCCATCTCCTAAAAGAACCTGAGGCTGATAAAAGTGATTCTGTTTCTATGCTGAGATTAAGTATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTATTGGAAGAAGAGGAAGAAAAACCTGTTGAGAGCGAAGGGGTCAAGGGAGATGAGAGCGGATCTCATTCTTCCCTCTGTGAATCTGTCTCTGAAGTTCAGGAAGCCGAGGTTGATAAGAAAGAGAAGGATGCTCCAAAGGAAAAGGCAGGAGCTACTGGTGATGCTGAATCCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTATTCCGCTCACATGTTGGTATTGATCCGGATGCTCACATTGATTTGCATGAGCTTGGGATGGAGCTTTGTTCTGAGGCACTTGAGGAAACAGTAACTAGTGAGGAGGCTCAAGATCTATTTGACAAGGCAGCTTCAAAGTTCCAGGAGGTGGCCGCTTTGGCATATTTCAACTGGGGAAATGTTCACATGTGCGCTGCTAGGAAGCGGATCCCCCTAGATGAGTCTGCTGGGAAAGAGGTAGTGGCCGAACAGCTTCAAGTGGCATATGACTGGGTCAAGGAAAAATATTCTTTGGCAAGAGAGAAGTATGAGGAAGCACTCTTGATCAAACCAGACTTCTATGAGGGACTGTTGGCTCTTGGGCAGCAACAATTTGAAATGGCTAAACTTCACTGGTCTTTTGCACTTGCTAAGAAGATAGATTTATCAGGCTGGGATTCTACAGAGACCCTTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACAGAGATGTGGGAGAAGCTAGAGGAACAGAGAGCAAAAGAGCTAAAGGACCCAAATGCAACTAAGAAAGAAGAACTGTTGAGAAGAAGAAAGAAACAGGGCAATGCTACAGAAGGTGAATCCTCCAATGTTGGTGGACAGGGTGATGTATCTGCAGAAGAAGCTGCTGAACAAGCAGTTGTCATGAGATCACAGATTCATCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTAGGAATGAGTGGTTGGGAGAAAAACCTGGATGCTGCAACCATACGCTTTAAGCTCGCCGGAGCTTCCGAGACAGATATTTCAATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAAAGATGGAGATGACAAAAAGGCCCAGAATCTACAACTCAACAAGGCTAATCAAGTATGA 2289 0.4688 MGKSGGRKKKGVSVAPVDSSGSAPTANGGVELDSSIFLKKAHELKEEGNKRYENKDYAAALEQYDNALRLIPKTHPDRAVFHSNKAACLMQVKPIDYEAVIAECTMALQVQPRFVRALLRRARAFEAVGSYEQAVQDVQLLLVADPNHRDALEIAQRLRTALGPRLEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPGPKKGANAAVGSVVSPNSKIDKAQPVLPTENGPESKSQMPKVALKPLTGSAKLPNSKVENQKELSIHSSTVQGQRSEVMVRFRPLKLVYDHDIRLAQMPVNCSFRVLRDIVSKRFPSSNSVLIKYKDCDGDLVTITSTDELRLAESTVDSHLLKEPEADKSDSVSMLRLSIVEVSPEQEPPLLEEEEEKPVESEGVKGDESGSHSSLCESVSEVQEAEVDKKEKDAPKEKAGATGDAESKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAYFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYDWVKEKYSLAREKYEEALLIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSTETLQLFDSAEEKMKAATEMWEKLEEQRAKELKDPNATKKEELLRRRKKQGNATEGESSNVGGQGDVSAEEAAEQAVVMRSQIHLFWGNMLFERSQVECKLGMSGWEKNLDAATIRFKLAGASETDISMVLKNHCSNGDAKDGDDKKAQNLQLNKANQV* 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4301 762 MobiDBLite consensus disorder prediction 629 671 - -
Lja4g4301 762 PANTHER - 1 757 - -
Lja4g4301 762 MobiDBLite consensus disorder prediction 629 656 - -
Lja4g4301 762 MobiDBLite consensus disorder prediction 1 28 - -
Lja4g4301 762 SUPERFAMILY CAD & PB1 domains 281 352 - -
Lja4g4301 762 Coils Coil 610 630 - -
Lja4g4301 762 SUPERFAMILY TPR-like 38 172 IPR011990 GO:0005515
Lja4g4301 762 Pfam PB1 domain 285 374 IPR000270 GO:0005515
Lja4g4301 762 MobiDBLite consensus disorder prediction 740 762 - -
Lja4g4301 762 PANTHER PROTEIN CLMP1 1 757 IPR044517 -
Lja4g4301 762 CDD PB1 287 346 - -
Lja4g4301 762 SUPERFAMILY TPR-like 490 586 IPR011990 GO:0005515
Lja4g4301 762 MobiDBLite consensus disorder prediction 197 272 - -
Lja4g4301 762 MobiDBLite consensus disorder prediction 255 272 - -
Lja4g4301 762 ProSiteProfiles TPR repeat profile. 115 148 IPR019734 GO:0005515
Lja4g4301 762 Gene3D - 285 356 - -
Lja4g4301 762 MobiDBLite consensus disorder prediction 416 441 - -
Lja4g4301 762 MobiDBLite consensus disorder prediction 213 238 - -
Lja4g4301 762 Gene3D Tetratricopeptide repeat domain 38 163 IPR011990 GO:0005515
Lja4g4301 762 SMART PB1_new 284 376 IPR000270 GO:0005515
Lja4g4301 762 Gene3D Tetratricopeptide repeat domain 446 664 IPR011990 GO:0005515
Lja4g4301 762 ProSiteProfiles TPR repeat profile. 41 74 IPR019734 GO:0005515
Lja4g4301 762 MobiDBLite consensus disorder prediction 377 441 - -
Lja4g4301 762 ProSiteProfiles PB1 domain profile. 284 376 IPR000270 GO:0005515
Lja4g4301 762 SMART tpr_5 79 114 IPR019734 GO:0005515
Lja4g4301 762 SMART tpr_5 41 74 IPR019734 GO:0005515
Lja4g4301 762 SMART tpr_5 115 148 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4301 Lja-Chr4 76632717 76635691 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4301 41 162 Calmodulin-binding Proteins AT3G25230 28.571 3.57e-09 58.2