Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g4298 ATGAGTCAACTCGGTCTCATCCTGCAGGAATCGCTCCGCAATGAAAGAGAAGCAAGAACCATCTTCGGTTTGCTAACCGAACAAATCGACGCCGGCGATACAGCTCACCGGAGGAGGCGCACCCTCAAAGAACGCCTCAGATTCACCGGAATGGGCTGCTGCGGTGCCACCTGGGTCTTCCGTCCCGTCCGCCAGGACCATCACGAAGAAGCTAGAGGAGAAGAAGGAACAAGAACTGTACAGCAACATCAACAGCAAGAGGAGATCCAGCAGGGTCAAGATCCGGACCCGTTGGTACCCGAATGCGTGGGTCCGGGTCCATCGGGCACGGGGATGAATCTCGCGGCGGCGTTGGCGGCGGAGCGGCAATTTCGGGGATCAGGGGAATCGGAGGGGGAGACGCCGTTGAGAGTGTCGTTGATGAGGCTGTTGGAGGAAACGGAGGTGGAAACAACAGCAACGGAGAAAGGAGGAGAGGGGAATGATTCGGTGTGCTGCGTGTGTATGGGAAGGAAGAAAGGTGCAGCGTTCATACCATGTGGTCACACTTTTTGCAGGGTGTGTTCCAGGGAGCTCTGGTTGAACCGAGGGAATTGCCCCCTTTGCAATCGTTCCATTCTCGAGATTCTCGACATCTTCTGA 642 0.5623 MSQLGLILQESLRNEREARTIFGLLTEQIDAGDTAHRRRRTLKERLRFTGMGCCGATWVFRPVRQDHHEEARGEEGTRTVQQHQQQEEIQQGQDPDPLVPECVGPGPSGTGMNLAAALAAERQFRGSGESEGETPLRVSLMRLLEETEVETTATEKGGEGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGNCPLCNRSILEILDIF* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g4298 213 ProSiteProfiles Zinc finger RING-type profile. 165 203 IPR001841 -
Lja4g4298 213 MobiDBLite consensus disorder prediction 68 99 - -
Lja4g4298 213 SMART ring_2 165 202 IPR001841 -
Lja4g4298 213 CDD RING-HC 165 202 - -
Lja4g4298 213 PANTHER OS01G0917900 PROTEIN 17 213 - -
Lja4g4298 213 SUPERFAMILY RING/U-box 150 210 - -
Lja4g4298 213 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 213 - -
Lja4g4298 213 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 212 IPR013083 -
Lja4g4298 213 Pfam Zinc finger, C3HC4 type (RING finger) 162 207 - -
Lja4g4298 213 MobiDBLite consensus disorder prediction 78 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g4298 Lja-Chr4 76605170 76606393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g4298 1 213 C3H Transcription Factor Family AT4G22250 51.982 1.51e-60 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja4g4298 - - lja:Lj4g3v0132500.1 265.388
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g4298 4 76605170 76606393 Lja4g4298 4 76605170 76606393 ECH
Lja4g4298 4 76605170 76606393 Lja6g2467 6 53571412 53572029 PCT